Strain Fitness in Dechlorosoma suillum PS around Dsui_3271

Experiment: ALP with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3269 and Dsui_3270 are separated by 71 nucleotidesDsui_3270 and Dsui_3271 are separated by 70 nucleotidesDsui_3271 and Dsui_3272 are separated by 16 nucleotidesDsui_3272 and Dsui_3273 are separated by 81 nucleotides Dsui_3269: Dsui_3269 - superoxide dismutase, at 3,508,316 to 3,508,903 _3269 Dsui_3270: Dsui_3270 - 2'-5' RNA ligase, at 3,508,975 to 3,509,652 _3270 Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724 _3271 Dsui_3272: Dsui_3272 - putative threonine efflux protein, at 3,510,741 to 3,511,388 _3272 Dsui_3273: Dsui_3273 - carbonic anhydrase, at 3,511,470 to 3,512,105 _3273 Position (kb) 3509 3510 3511Strain fitness (log2 ratio) -2 -1 0 1at 3508.994 kb on + strandat 3508.999 kb on + strandat 3509.001 kb on - strandat 3509.002 kb on - strandat 3509.106 kb on - strandat 3509.106 kb on - strandat 3509.276 kb on + strand, within Dsui_3270at 3509.282 kb on + strand, within Dsui_3270at 3509.290 kb on - strand, within Dsui_3270at 3509.345 kb on + strand, within Dsui_3270at 3509.497 kb on - strand, within Dsui_3270at 3509.590 kb on - strandat 3509.596 kb on - strandat 3509.654 kb on - strandat 3509.718 kb on + strandat 3509.718 kb on + strandat 3509.763 kb on + strandat 3509.771 kb on - strandat 3509.878 kb on - strand, within Dsui_3271at 3510.010 kb on + strand, within Dsui_3271at 3510.018 kb on - strandat 3510.103 kb on + strand, within Dsui_3271at 3510.111 kb on - strandat 3510.117 kb on - strandat 3510.239 kb on + strand, within Dsui_3271at 3510.267 kb on + strand, within Dsui_3271at 3510.267 kb on + strand, within Dsui_3271at 3510.369 kb on + strandat 3510.379 kb on + strandat 3510.426 kb on - strand, within Dsui_3271at 3510.445 kb on + strand, within Dsui_3271at 3510.445 kb on + strand, within Dsui_3271at 3510.453 kb on - strand, within Dsui_3271at 3510.453 kb on - strandat 3510.453 kb on - strand, within Dsui_3271at 3510.453 kb on - strandat 3510.453 kb on - strand, within Dsui_3271at 3510.466 kb on + strand, within Dsui_3271at 3510.474 kb on - strandat 3510.474 kb on - strandat 3510.636 kb on + strandat 3510.643 kb on + strandat 3510.643 kb on + strandat 3510.651 kb on - strandat 3510.651 kb on - strandat 3510.712 kb on - strandat 3510.712 kb on - strandat 3510.733 kb on + strandat 3510.759 kb on + strandat 3510.769 kb on + strandat 3510.769 kb on + strandat 3510.777 kb on - strandat 3510.777 kb on - strandat 3510.777 kb on - strandat 3510.793 kb on + strandat 3510.841 kb on - strand, within Dsui_3272at 3510.903 kb on - strand, within Dsui_3272at 3510.919 kb on + strand, within Dsui_3272at 3511.014 kb on - strand, within Dsui_3272at 3511.127 kb on + strand, within Dsui_3272at 3511.135 kb on - strandat 3511.183 kb on + strand, within Dsui_3272at 3511.191 kb on - strandat 3511.229 kb on + strand, within Dsui_3272at 3511.232 kb on + strandat 3511.240 kb on + strand, within Dsui_3272at 3511.464 kb on - strandat 3511.464 kb on - strandat 3511.466 kb on + strandat 3511.466 kb on + strandat 3511.485 kb on - strandat 3511.582 kb on + strandat 3511.585 kb on - strand, within Dsui_3273at 3511.585 kb on - strand, within Dsui_3273at 3511.592 kb on + strandat 3511.677 kb on + strandat 3511.698 kb on - strand, within Dsui_3273at 3511.707 kb on + strandat 3511.707 kb on + strandat 3511.714 kb on + strandat 3511.722 kb on - strand, within Dsui_3273

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
remove
3,508,994 + -1.5
3,508,999 + -1.0
3,509,001 - +0.7
3,509,002 - -0.3
3,509,106 - +0.7
3,509,106 - +0.7
3,509,276 + Dsui_3270 0.44 -2.7
3,509,282 + Dsui_3270 0.45 -0.9
3,509,290 - Dsui_3270 0.46 -0.3
3,509,345 + Dsui_3270 0.55 -2.4
3,509,497 - Dsui_3270 0.77 +0.7
3,509,590 - -0.3
3,509,596 - +0.7
3,509,654 - -0.3
3,509,718 + -1.8
3,509,718 + -0.3
3,509,763 + -2.5
3,509,771 - +0.7
3,509,878 - Dsui_3271 0.15 -2.4
3,510,010 + Dsui_3271 0.29 +0.7
3,510,018 - -0.9
3,510,103 + Dsui_3271 0.38 -0.3
3,510,111 - -0.3
3,510,117 - +0.7
3,510,239 + Dsui_3271 0.51 -1.6
3,510,267 + Dsui_3271 0.54 -1.6
3,510,267 + Dsui_3271 0.54 +0.7
3,510,369 + -0.3
3,510,379 + +0.7
3,510,426 - Dsui_3271 0.70 -0.3
3,510,445 + Dsui_3271 0.72 -1.3
3,510,445 + Dsui_3271 0.72 +0.7
3,510,453 - Dsui_3271 0.73 -0.9
3,510,453 - +0.7
3,510,453 - Dsui_3271 0.73 -1.3
3,510,453 - +0.7
3,510,453 - Dsui_3271 0.73 -1.6
3,510,466 + Dsui_3271 0.74 -0.3
3,510,474 - +0.7
3,510,474 - -0.9
3,510,636 + -0.5
3,510,643 + -0.3
3,510,643 + -0.3
3,510,651 - +0.7
3,510,651 - +0.7
3,510,712 - +0.7
3,510,712 - -0.3
3,510,733 + -0.3
3,510,759 + -0.8
3,510,769 + -1.8
3,510,769 + -0.3
3,510,777 - -0.8
3,510,777 - -2.3
3,510,777 - +0.7
3,510,793 + +0.7
3,510,841 - Dsui_3272 0.15 -2.4
3,510,903 - Dsui_3272 0.25 -1.6
3,510,919 + Dsui_3272 0.27 -1.8
3,511,014 - Dsui_3272 0.42 -0.8
3,511,127 + Dsui_3272 0.60 -1.3
3,511,135 - +0.7
3,511,183 + Dsui_3272 0.68 -1.6
3,511,191 - +0.7
3,511,229 + Dsui_3272 0.75 -1.3
3,511,232 + +0.7
3,511,240 + Dsui_3272 0.77 -0.8
3,511,464 - -0.6
3,511,464 - -1.2
3,511,466 + +0.7
3,511,466 + +0.7
3,511,485 - -0.0
3,511,582 + +0.7
3,511,585 - Dsui_3273 0.18 -0.4
3,511,585 - Dsui_3273 0.18 -0.8
3,511,592 + +0.7
3,511,677 + +0.7
3,511,698 - Dsui_3273 0.36 -0.6
3,511,707 + +0.7
3,511,707 + +0.7
3,511,714 + +0.7
3,511,722 - Dsui_3273 0.40 -0.1

Or see this region's nucleotide sequence