Strain Fitness in Dechlorosoma suillum PS around Dsui_3223

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3221 and Dsui_3222 are separated by 39 nucleotidesDsui_3222 and Dsui_3223 are separated by 140 nucleotidesDsui_3223 and Dsui_3224 are separated by 11 nucleotidesDsui_3224 and Dsui_3225 overlap by 4 nucleotides Dsui_3221: Dsui_3221 - cytochrome c553, at 3,460,034 to 3,460,720 _3221 Dsui_3222: Dsui_3222 - oligoribonuclease (3'->5' exoribonuclease), at 3,460,760 to 3,461,305 _3222 Dsui_3223: Dsui_3223 - Zn-dependent protease with chaperone function, at 3,461,446 to 3,462,717 _3223 Dsui_3224: Dsui_3224 - pterin-4a-carbinolamine dehydratase, at 3,462,729 to 3,463,064 _3224 Dsui_3225: Dsui_3225 - ribosome small subunit-dependent GTPase A, at 3,463,061 to 3,463,948 _3225 Position (kb) 3461 3462 3463Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3460.498 kb on - strand, within Dsui_3221at 3460.660 kb on + strandat 3460.673 kb on + strandat 3460.673 kb on + strandat 3460.680 kb on + strandat 3460.688 kb on - strandat 3460.722 kb on + strandat 3460.726 kb on + strandat 3461.345 kb on + strandat 3461.353 kb on - strandat 3461.356 kb on + strandat 3461.393 kb on + strandat 3461.394 kb on + strandat 3461.480 kb on + strandat 3461.484 kb on - strandat 3461.522 kb on - strandat 3461.537 kb on - strandat 3461.580 kb on + strand, within Dsui_3223at 3461.617 kb on + strand, within Dsui_3223at 3461.657 kb on + strand, within Dsui_3223at 3461.672 kb on + strand, within Dsui_3223at 3461.750 kb on + strand, within Dsui_3223at 3461.758 kb on - strand, within Dsui_3223at 3461.797 kb on - strand, within Dsui_3223at 3461.858 kb on + strand, within Dsui_3223at 3461.858 kb on + strand, within Dsui_3223at 3461.863 kb on + strand, within Dsui_3223at 3461.918 kb on + strand, within Dsui_3223at 3461.962 kb on - strandat 3461.978 kb on + strand, within Dsui_3223at 3461.986 kb on - strandat 3462.152 kb on + strand, within Dsui_3223at 3462.219 kb on + strand, within Dsui_3223at 3462.249 kb on + strand, within Dsui_3223at 3462.280 kb on - strand, within Dsui_3223at 3462.286 kb on - strandat 3462.287 kb on + strand, within Dsui_3223at 3462.319 kb on + strand, within Dsui_3223at 3462.327 kb on - strand, within Dsui_3223at 3462.332 kb on - strand, within Dsui_3223at 3462.366 kb on + strand, within Dsui_3223at 3462.409 kb on + strand, within Dsui_3223at 3462.427 kb on + strand, within Dsui_3223at 3462.464 kb on + strand, within Dsui_3223at 3462.517 kb on + strand, within Dsui_3223at 3462.535 kb on + strand, within Dsui_3223at 3462.556 kb on - strand, within Dsui_3223at 3462.563 kb on - strand, within Dsui_3223at 3462.570 kb on + strand, within Dsui_3223at 3462.605 kb on + strandat 3462.605 kb on + strandat 3462.605 kb on + strandat 3462.687 kb on + strandat 3462.698 kb on + strandat 3462.720 kb on - strandat 3462.740 kb on - strandat 3462.768 kb on - strand, within Dsui_3224at 3462.962 kb on + strand, within Dsui_3224at 3462.965 kb on - strand, within Dsui_3224at 3462.970 kb on - strand, within Dsui_3224at 3463.072 kb on + strandat 3463.079 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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3,460,498 - Dsui_3221 0.68 -0.1
3,460,660 + +0.7
3,460,673 + -1.3
3,460,673 + -0.9
3,460,680 + -1.7
3,460,688 - -0.1
3,460,722 + +0.7
3,460,726 + +0.7
3,461,345 + -1.8
3,461,353 - +0.7
3,461,356 + -0.6
3,461,393 + -1.7
3,461,394 + -2.6
3,461,480 + -1.5
3,461,484 - -1.3
3,461,522 - +0.7
3,461,537 - -0.3
3,461,580 + Dsui_3223 0.11 -1.2
3,461,617 + Dsui_3223 0.13 -1.4
3,461,657 + Dsui_3223 0.17 -2.4
3,461,672 + Dsui_3223 0.18 -3.2
3,461,750 + Dsui_3223 0.24 -1.0
3,461,758 - Dsui_3223 0.25 +0.7
3,461,797 - Dsui_3223 0.28 -1.3
3,461,858 + Dsui_3223 0.32 -2.4
3,461,858 + Dsui_3223 0.32 -0.3
3,461,863 + Dsui_3223 0.33 -2.4
3,461,918 + Dsui_3223 0.37 -2.4
3,461,962 - +0.7
3,461,978 + Dsui_3223 0.42 -2.2
3,461,986 - +0.7
3,462,152 + Dsui_3223 0.56 -0.3
3,462,219 + Dsui_3223 0.61 -1.6
3,462,249 + Dsui_3223 0.63 -1.1
3,462,280 - Dsui_3223 0.66 +0.7
3,462,286 - +0.7
3,462,287 + Dsui_3223 0.66 -3.8
3,462,319 + Dsui_3223 0.69 +0.5
3,462,327 - Dsui_3223 0.69 -1.6
3,462,332 - Dsui_3223 0.70 -0.3
3,462,366 + Dsui_3223 0.72 -0.3
3,462,409 + Dsui_3223 0.76 -1.6
3,462,427 + Dsui_3223 0.77 -0.6
3,462,464 + Dsui_3223 0.80 -0.3
3,462,517 + Dsui_3223 0.84 -0.4
3,462,535 + Dsui_3223 0.86 -0.0
3,462,556 - Dsui_3223 0.87 -0.3
3,462,563 - Dsui_3223 0.88 -1.3
3,462,570 + Dsui_3223 0.88 +0.0
3,462,605 + -0.6
3,462,605 + -1.3
3,462,605 + -0.4
3,462,687 + -0.6
3,462,698 + -1.1
3,462,720 - +0.7
3,462,740 - -0.3
3,462,768 - Dsui_3224 0.12 +0.7
3,462,962 + Dsui_3224 0.69 -1.3
3,462,965 - Dsui_3224 0.70 +0.7
3,462,970 - Dsui_3224 0.72 -0.9
3,463,072 + -2.6
3,463,079 + -2.0

Or see this region's nucleotide sequence