Strain Fitness in Dechlorosoma suillum PS around Dsui_3171

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3170 and Dsui_3171 are separated by 579 nucleotidesDsui_3171 and Dsui_3172 are separated by 91 nucleotides Dsui_3170: Dsui_3170 - PilZ domain-containing protein, at 3,399,380 to 3,400,111 _3170 Dsui_3171: Dsui_3171 - putative protein-disulfide isomerase, at 3,400,691 to 3,401,347 _3171 Dsui_3172: Dsui_3172 - Zn-dependent hydrolase, glyoxylase, at 3,401,439 to 3,402,341 _3172 Position (kb) 3400 3401 3402Strain fitness (log2 ratio) -2 -1 0 1at 3399.729 kb on + strand, within Dsui_3170at 3399.762 kb on - strandat 3399.887 kb on - strand, within Dsui_3170at 3399.936 kb on - strand, within Dsui_3170at 3399.972 kb on + strand, within Dsui_3170at 3399.994 kb on - strandat 3400.043 kb on + strandat 3400.051 kb on - strandat 3400.151 kb on + strandat 3400.160 kb on - strandat 3400.235 kb on - strandat 3400.253 kb on + strandat 3400.253 kb on + strandat 3400.261 kb on - strandat 3400.261 kb on - strandat 3400.261 kb on - strandat 3400.316 kb on - strandat 3400.321 kb on + strandat 3400.373 kb on - strandat 3400.402 kb on + strandat 3400.406 kb on + strandat 3400.409 kb on - strandat 3400.409 kb on - strandat 3400.418 kb on + strandat 3400.418 kb on + strandat 3400.418 kb on + strandat 3400.419 kb on + strandat 3400.564 kb on - strandat 3400.575 kb on - strandat 3400.590 kb on - strandat 3400.645 kb on + strandat 3400.688 kb on + strandat 3400.696 kb on - strandat 3400.831 kb on - strand, within Dsui_3171at 3400.879 kb on - strand, within Dsui_3171at 3400.946 kb on - strand, within Dsui_3171at 3401.021 kb on + strandat 3401.173 kb on - strandat 3401.179 kb on - strand, within Dsui_3171at 3401.191 kb on + strandat 3401.332 kb on + strandat 3401.342 kb on + strandat 3401.478 kb on + strandat 3401.486 kb on - strandat 3401.558 kb on - strandat 3401.739 kb on - strandat 3401.798 kb on + strandat 3401.890 kb on - strandat 3401.989 kb on + strand, within Dsui_3172at 3401.999 kb on + strandat 3402.000 kb on + strandat 3402.140 kb on - strandat 3402.140 kb on - strandat 3402.150 kb on - strand, within Dsui_3172at 3402.157 kb on + strandat 3402.191 kb on + strand, within Dsui_3172at 3402.219 kb on - strandat 3402.228 kb on - strandat 3402.236 kb on + strandat 3402.288 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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3,399,729 + Dsui_3170 0.48 -1.4
3,399,762 - +0.6
3,399,887 - Dsui_3170 0.69 +0.6
3,399,936 - Dsui_3170 0.76 +0.6
3,399,972 + Dsui_3170 0.81 -1.0
3,399,994 - +0.6
3,400,043 + +0.1
3,400,051 - +0.6
3,400,151 + -1.0
3,400,160 - +0.6
3,400,235 - +0.6
3,400,253 + -1.0
3,400,253 + -0.4
3,400,261 - -0.4
3,400,261 - +0.6
3,400,261 - +0.6
3,400,316 - -1.7
3,400,321 + -1.4
3,400,373 - -1.0
3,400,402 + -0.7
3,400,406 + -0.4
3,400,409 - -0.4
3,400,409 - -0.4
3,400,418 + +0.6
3,400,418 + +0.6
3,400,418 + +0.6
3,400,419 + +0.6
3,400,564 - +0.6
3,400,575 - -1.0
3,400,590 - +0.6
3,400,645 + -0.4
3,400,688 + +0.6
3,400,696 - -1.0
3,400,831 - Dsui_3171 0.21 -2.0
3,400,879 - Dsui_3171 0.29 -1.7
3,400,946 - Dsui_3171 0.39 -1.4
3,401,021 + +0.6
3,401,173 - +0.6
3,401,179 - Dsui_3171 0.74 -0.4
3,401,191 + -1.4
3,401,332 + +0.6
3,401,342 + +0.6
3,401,478 + -1.4
3,401,486 - +0.6
3,401,558 - +0.6
3,401,739 - -0.4
3,401,798 + +0.6
3,401,890 - +0.6
3,401,989 + Dsui_3172 0.61 +0.6
3,401,999 + +0.6
3,402,000 + +0.6
3,402,140 - +0.6
3,402,140 - +0.6
3,402,150 - Dsui_3172 0.79 +0.6
3,402,157 + +0.6
3,402,191 + Dsui_3172 0.83 -1.4
3,402,219 - +0.6
3,402,228 - -0.4
3,402,236 + +0.6
3,402,288 + -0.4

Or see this region's nucleotide sequence