Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3105 and Dsui_3106 are separated by 291 nucleotides Dsui_3106 and Dsui_3107 overlap by 8 nucleotides Dsui_3107 and Dsui_3108 are separated by 38 nucleotides
Dsui_3105: Dsui_3105 - CBS domain-containing protein, at 3,324,730 to 3,326,046
_3105
Dsui_3106: Dsui_3106 - hypothetical protein, at 3,326,338 to 3,326,718
_3106
Dsui_3107: Dsui_3107 - Zn-dependent hydrolase, glyoxylase, at 3,326,711 to 3,327,349
_3107
Dsui_3108: Dsui_3108 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,327,388 to 3,330,702
_3108
Position (kb)
3326
3327 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3325.534 kb on - strand, within Dsui_3105 at 3325.736 kb on + strand, within Dsui_3105 at 3325.744 kb on - strand, within Dsui_3105 at 3325.791 kb on + strand, within Dsui_3105 at 3325.798 kb on + strand, within Dsui_3105 at 3325.799 kb on - strand, within Dsui_3105 at 3326.076 kb on + strand at 3326.084 kb on - strand at 3326.084 kb on - strand at 3326.168 kb on - strand at 3326.227 kb on - strand at 3326.270 kb on - strand at 3326.344 kb on - strand at 3326.513 kb on - strand, within Dsui_3106 at 3326.572 kb on + strand, within Dsui_3106 at 3326.581 kb on + strand at 3326.647 kb on - strand, within Dsui_3106 at 3326.903 kb on - strand, within Dsui_3107 at 3326.908 kb on + strand at 3326.912 kb on - strand, within Dsui_3107 at 3326.974 kb on - strand, within Dsui_3107 at 3327.039 kb on - strand, within Dsui_3107 at 3327.073 kb on + strand at 3327.090 kb on + strand at 3327.189 kb on + strand at 3327.199 kb on + strand at 3327.205 kb on + strand at 3327.213 kb on - strand, within Dsui_3107 at 3327.213 kb on - strand, within Dsui_3107 at 3327.291 kb on + strand at 3327.359 kb on - strand at 3327.518 kb on - strand at 3327.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 3,325,534 - Dsui_3105 0.61 +2.9 3,325,736 + Dsui_3105 0.76 -0.9 3,325,744 - Dsui_3105 0.77 +2.9 3,325,791 + Dsui_3105 0.81 -1.3 3,325,798 + Dsui_3105 0.81 -0.9 3,325,799 - Dsui_3105 0.81 +2.7 3,326,076 + -0.9 3,326,084 - +2.5 3,326,084 - +2.8 3,326,168 - -2.3 3,326,227 - -0.3 3,326,270 - -0.1 3,326,344 - -0.7 3,326,513 - Dsui_3106 0.46 -0.4 3,326,572 + Dsui_3106 0.61 -0.3 3,326,581 + +0.7 3,326,647 - Dsui_3106 0.81 -0.6 3,326,903 - Dsui_3107 0.30 -0.0 3,326,908 + -0.3 3,326,912 - Dsui_3107 0.31 -0.9 3,326,974 - Dsui_3107 0.41 -0.9 3,327,039 - Dsui_3107 0.51 -0.6 3,327,073 + +0.7 3,327,090 + -0.9 3,327,189 + -0.3 3,327,199 + -0.3 3,327,205 + +0.7 3,327,213 - Dsui_3107 0.79 -0.7 3,327,213 - Dsui_3107 0.79 +0.0 3,327,291 + +0.7 3,327,359 - +0.7 3,327,518 - +0.3 3,327,579 + -0.9
Or see this region's nucleotide sequence