Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2921 and Dsui_2922 are separated by 18 nucleotides Dsui_2922 and Dsui_2923 are separated by 199 nucleotides
Dsui_2921: Dsui_2921 - isochorismate synthase family protein, at 3,122,236 to 3,123,675
_2921
Dsui_2922: Dsui_2922 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 3,123,694 to 3,125,469
_2922
Dsui_2923: Dsui_2923 - esterase/lipase, at 3,125,669 to 3,126,511
_2923
Position (kb)
3123
3124
3125
3126 Strain fitness (log2 ratio)
-2
-1
0
1 at 3122.713 kb on + strand, within Dsui_2921 at 3122.716 kb on - strand, within Dsui_2921 at 3122.804 kb on - strand at 3122.908 kb on + strand at 3123.106 kb on + strand, within Dsui_2921 at 3123.109 kb on - strand at 3123.496 kb on + strand, within Dsui_2921 at 3123.797 kb on + strand at 3123.815 kb on + strand at 3123.875 kb on + strand, within Dsui_2922 at 3123.899 kb on - strand at 3123.937 kb on - strand, within Dsui_2922 at 3124.034 kb on + strand, within Dsui_2922 at 3124.056 kb on + strand, within Dsui_2922 at 3124.121 kb on + strand, within Dsui_2922 at 3124.189 kb on + strand, within Dsui_2922 at 3124.256 kb on + strand, within Dsui_2922 at 3124.256 kb on + strand, within Dsui_2922 at 3124.397 kb on - strand at 3124.431 kb on + strand, within Dsui_2922 at 3124.431 kb on + strand, within Dsui_2922 at 3124.461 kb on - strand at 3124.549 kb on + strand, within Dsui_2922 at 3124.557 kb on - strand, within Dsui_2922 at 3124.580 kb on + strand at 3124.655 kb on + strand, within Dsui_2922 at 3124.657 kb on - strand at 3124.812 kb on + strand, within Dsui_2922 at 3124.859 kb on + strand, within Dsui_2922 at 3124.884 kb on + strand, within Dsui_2922 at 3124.947 kb on + strand, within Dsui_2922 at 3125.057 kb on - strand at 3125.067 kb on - strand at 3125.441 kb on - strand at 3125.599 kb on + strand at 3125.607 kb on - strand at 3125.808 kb on + strand, within Dsui_2923 at 3125.808 kb on + strand, within Dsui_2923 at 3125.814 kb on - strand at 3125.816 kb on - strand at 3125.816 kb on - strand at 3125.949 kb on + strand, within Dsui_2923 at 3126.057 kb on + strand, within Dsui_2923 at 3126.086 kb on + strand, within Dsui_2923 at 3126.094 kb on - strand at 3126.097 kb on + strand, within Dsui_2923 at 3126.097 kb on + strand, within Dsui_2923 at 3126.123 kb on + strand, within Dsui_2923 at 3126.201 kb on + strand at 3126.209 kb on - strand at 3126.290 kb on - strand, within Dsui_2923 at 3126.341 kb on - strand at 3126.360 kb on + strand, within Dsui_2923 at 3126.405 kb on + strand, within Dsui_2923 at 3126.411 kb on - strand, within Dsui_2923 at 3126.411 kb on - strand, within Dsui_2923
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 3,122,713 + Dsui_2921 0.33 -1.4 3,122,716 - Dsui_2921 0.33 -1.3 3,122,804 - -0.3 3,122,908 + +0.7 3,123,106 + Dsui_2921 0.60 +1.6 3,123,109 - +0.7 3,123,496 + Dsui_2921 0.88 -2.3 3,123,797 + +0.7 3,123,815 + +0.7 3,123,875 + Dsui_2922 0.10 -1.8 3,123,899 - -1.8 3,123,937 - Dsui_2922 0.14 -0.3 3,124,034 + Dsui_2922 0.19 -0.9 3,124,056 + Dsui_2922 0.20 -1.3 3,124,121 + Dsui_2922 0.24 -1.3 3,124,189 + Dsui_2922 0.28 +1.7 3,124,256 + Dsui_2922 0.32 -0.3 3,124,256 + Dsui_2922 0.32 +0.7 3,124,397 - +0.7 3,124,431 + Dsui_2922 0.41 -1.1 3,124,431 + Dsui_2922 0.41 -1.8 3,124,461 - -0.8 3,124,549 + Dsui_2922 0.48 -0.8 3,124,557 - Dsui_2922 0.49 -1.6 3,124,580 + +0.7 3,124,655 + Dsui_2922 0.54 -1.3 3,124,657 - +0.7 3,124,812 + Dsui_2922 0.63 -1.3 3,124,859 + Dsui_2922 0.66 -2.3 3,124,884 + Dsui_2922 0.67 -1.3 3,124,947 + Dsui_2922 0.71 -1.6 3,125,057 - +0.7 3,125,067 - +0.7 3,125,441 - -0.3 3,125,599 + -0.8 3,125,607 - -0.3 3,125,808 + Dsui_2923 0.16 -0.9 3,125,808 + Dsui_2923 0.16 -1.0 3,125,814 - +0.7 3,125,816 - +0.7 3,125,816 - +0.7 3,125,949 + Dsui_2923 0.33 +0.1 3,126,057 + Dsui_2923 0.46 -0.9 3,126,086 + Dsui_2923 0.49 -1.5 3,126,094 - +0.7 3,126,097 + Dsui_2923 0.51 -0.5 3,126,097 + Dsui_2923 0.51 +0.0 3,126,123 + Dsui_2923 0.54 -1.6 3,126,201 + -0.6 3,126,209 - -1.6 3,126,290 - Dsui_2923 0.74 -2.7 3,126,341 - +0.7 3,126,360 + Dsui_2923 0.82 -1.6 3,126,405 + Dsui_2923 0.87 -0.3 3,126,411 - Dsui_2923 0.88 -0.8 3,126,411 - Dsui_2923 0.88 +0.7
Or see this region's nucleotide sequence