Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2894 and Dsui_2895 overlap by 4 nucleotides Dsui_2895 and Dsui_2896 are separated by 6 nucleotides
Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444
_2894
Dsui_2895: Dsui_2895 - ABC-type uncharacterized transport system, periplasmic component, at 3,096,441 to 3,097,430
_2895
Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677
_2896
Position (kb)
3096
3097
3098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3095.518 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.596 kb on - strand, within Dsui_2894 at 3095.738 kb on + strand at 3095.878 kb on + strand at 3095.896 kb on - strand, within Dsui_2894 at 3095.943 kb on + strand at 3095.945 kb on - strand, within Dsui_2894 at 3095.945 kb on - strand, within Dsui_2894 at 3096.049 kb on + strand at 3096.057 kb on - strand, within Dsui_2894 at 3096.201 kb on - strand, within Dsui_2894 at 3096.279 kb on - strand at 3096.347 kb on + strand at 3096.455 kb on - strand at 3096.460 kb on - strand at 3096.477 kb on - strand at 3096.566 kb on + strand at 3096.574 kb on - strand, within Dsui_2895 at 3096.651 kb on + strand at 3096.712 kb on - strand, within Dsui_2895 at 3096.862 kb on - strand, within Dsui_2895 at 3096.878 kb on - strand, within Dsui_2895 at 3096.964 kb on + strand, within Dsui_2895 at 3097.161 kb on + strand, within Dsui_2895 at 3097.339 kb on - strand at 3097.414 kb on + strand at 3097.529 kb on - strand at 3097.558 kb on - strand at 3097.596 kb on + strand at 3097.631 kb on - strand at 3097.631 kb on - strand at 3097.651 kb on + strand at 3097.669 kb on + strand at 3097.703 kb on + strand, within Dsui_2896 at 3097.718 kb on - strand, within Dsui_2896 at 3097.747 kb on - strand, within Dsui_2896 at 3097.790 kb on + strand, within Dsui_2896 at 3097.790 kb on + strand, within Dsui_2896 at 3097.793 kb on - strand, within Dsui_2896 at 3097.799 kb on + strand at 3097.853 kb on - strand, within Dsui_2896 at 3097.967 kb on + strand at 3097.975 kb on - strand, within Dsui_2896 at 3098.012 kb on + strand at 3098.099 kb on - strand, within Dsui_2896 at 3098.101 kb on - strand, within Dsui_2896 at 3098.110 kb on + strand, within Dsui_2896 at 3098.115 kb on - strand, within Dsui_2896 at 3098.118 kb on - strand, within Dsui_2896 at 3098.150 kb on + strand at 3098.150 kb on + strand, within Dsui_2896 at 3098.158 kb on - strand, within Dsui_2896 at 3098.158 kb on - strand, within Dsui_2896 at 3098.191 kb on - strand, within Dsui_2896 at 3098.348 kb on + strand, within Dsui_2896 at 3098.356 kb on - strand, within Dsui_2896 at 3098.356 kb on - strand, within Dsui_2896 at 3098.401 kb on + strand, within Dsui_2896 at 3098.403 kb on - strand, within Dsui_2896 at 3098.403 kb on - strand, within Dsui_2896
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 3,095,518 - Dsui_2894 0.57 +0.7 3,095,535 - Dsui_2894 0.58 -0.3 3,095,535 - Dsui_2894 0.58 +0.7 3,095,596 - Dsui_2894 0.61 +0.7 3,095,738 + +0.7 3,095,878 + +0.7 3,095,896 - Dsui_2894 0.75 -1.3 3,095,943 + -0.3 3,095,945 - Dsui_2894 0.77 -0.8 3,095,945 - Dsui_2894 0.77 +0.7 3,096,049 + -0.3 3,096,057 - Dsui_2894 0.82 +0.7 3,096,201 - Dsui_2894 0.89 -1.6 3,096,279 - -0.3 3,096,347 + -0.3 3,096,455 - -0.3 3,096,460 - +0.7 3,096,477 - +0.7 3,096,566 + -0.3 3,096,574 - Dsui_2895 0.13 -1.8 3,096,651 + -0.3 3,096,712 - Dsui_2895 0.27 -3.3 3,096,862 - Dsui_2895 0.43 +2.3 3,096,878 - Dsui_2895 0.44 -0.8 3,096,964 + Dsui_2895 0.53 -0.3 3,097,161 + Dsui_2895 0.73 -0.8 3,097,339 - -1.8 3,097,414 + -1.6 3,097,529 - -0.6 3,097,558 - -0.2 3,097,596 + -0.8 3,097,631 - -1.7 3,097,631 - -0.1 3,097,651 + -0.3 3,097,669 + +0.7 3,097,703 + Dsui_2896 0.12 -1.8 3,097,718 - Dsui_2896 0.13 -1.2 3,097,747 - Dsui_2896 0.14 -0.6 3,097,790 + Dsui_2896 0.16 -1.3 3,097,790 + Dsui_2896 0.16 -0.8 3,097,793 - Dsui_2896 0.16 +0.0 3,097,799 + +0.7 3,097,853 - Dsui_2896 0.19 +1.1 3,097,967 + +0.7 3,097,975 - Dsui_2896 0.24 -0.1 3,098,012 + -0.3 3,098,099 - Dsui_2896 0.30 -0.9 3,098,101 - Dsui_2896 0.30 -0.3 3,098,110 + Dsui_2896 0.30 -0.3 3,098,115 - Dsui_2896 0.30 -0.1 3,098,118 - Dsui_2896 0.30 +0.9 3,098,150 + -0.3 3,098,150 + Dsui_2896 0.32 -0.8 3,098,158 - Dsui_2896 0.32 -0.4 3,098,158 - Dsui_2896 0.32 -0.6 3,098,191 - Dsui_2896 0.34 -0.3 3,098,348 + Dsui_2896 0.41 -0.1 3,098,356 - Dsui_2896 0.41 -0.5 3,098,356 - Dsui_2896 0.41 -0.3 3,098,401 + Dsui_2896 0.43 -0.8 3,098,403 - Dsui_2896 0.43 -0.1 3,098,403 - Dsui_2896 0.43 +1.7
Or see this region's nucleotide sequence