Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2783 and Dsui_2784 are separated by 871 nucleotides Dsui_2784 and Dsui_2785 are separated by 147 nucleotides
Dsui_2783: Dsui_2783 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,950,288 to 2,951,418
_2783
Dsui_2784: Dsui_2784 - hypothetical protein, at 2,952,290 to 2,952,892
_2784
Dsui_2785: Dsui_2785 - DNA topoisomerase IV, A subunit, proteobacterial, at 2,953,040 to 2,955,583
_2785
Position (kb)
2952
2953 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2951.392 kb on + strand at 2951.392 kb on + strand at 2951.392 kb on + strand at 2951.392 kb on + strand at 2951.400 kb on - strand at 2951.415 kb on + strand at 2951.457 kb on - strand at 2951.526 kb on - strand at 2951.584 kb on + strand at 2951.646 kb on - strand at 2951.721 kb on + strand at 2951.736 kb on + strand at 2951.744 kb on - strand at 2951.793 kb on - strand at 2951.916 kb on - strand at 2952.003 kb on - strand at 2952.107 kb on - strand at 2952.174 kb on - strand at 2952.188 kb on - strand at 2952.249 kb on - strand at 2952.277 kb on - strand at 2952.356 kb on - strand, within Dsui_2784 at 2952.356 kb on - strand, within Dsui_2784 at 2952.357 kb on - strand, within Dsui_2784 at 2952.367 kb on - strand, within Dsui_2784 at 2952.367 kb on - strand, within Dsui_2784 at 2952.367 kb on - strand at 2952.383 kb on + strand, within Dsui_2784 at 2952.389 kb on - strand at 2952.406 kb on + strand, within Dsui_2784 at 2952.406 kb on + strand, within Dsui_2784 at 2952.414 kb on - strand, within Dsui_2784 at 2952.438 kb on - strand, within Dsui_2784 at 2952.456 kb on + strand, within Dsui_2784 at 2952.475 kb on + strand, within Dsui_2784 at 2952.511 kb on - strand, within Dsui_2784 at 2952.513 kb on + strand, within Dsui_2784 at 2952.560 kb on + strand, within Dsui_2784 at 2952.560 kb on + strand, within Dsui_2784 at 2952.563 kb on + strand, within Dsui_2784 at 2952.568 kb on - strand, within Dsui_2784 at 2952.569 kb on + strand, within Dsui_2784 at 2952.570 kb on + strand, within Dsui_2784 at 2952.570 kb on + strand, within Dsui_2784 at 2952.570 kb on + strand at 2952.578 kb on - strand at 2952.639 kb on - strand at 2952.642 kb on + strand, within Dsui_2784 at 2952.647 kb on + strand, within Dsui_2784 at 2952.731 kb on - strand at 2952.773 kb on + strand, within Dsui_2784 at 2952.781 kb on - strand at 2952.803 kb on + strand, within Dsui_2784 at 2952.809 kb on - strand at 2952.913 kb on + strand at 2953.051 kb on - strand at 2953.051 kb on - strand at 2953.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 2,951,392 + -1.5 2,951,392 + +0.8 2,951,392 + -2.0 2,951,392 + -2.0 2,951,400 - -2.8 2,951,415 + -0.8 2,951,457 - +0.8 2,951,526 - +0.8 2,951,584 + -0.2 2,951,646 - -0.8 2,951,721 + -0.8 2,951,736 + -0.2 2,951,744 - +0.8 2,951,793 - +0.8 2,951,916 - -0.2 2,952,003 - -1.5 2,952,107 - +0.8 2,952,174 - +0.8 2,952,188 - -1.2 2,952,249 - +0.8 2,952,277 - +0.8 2,952,356 - Dsui_2784 0.11 +0.8 2,952,356 - Dsui_2784 0.11 +0.8 2,952,357 - Dsui_2784 0.11 -0.2 2,952,367 - Dsui_2784 0.13 +0.8 2,952,367 - Dsui_2784 0.13 +0.8 2,952,367 - +0.8 2,952,383 + Dsui_2784 0.15 -0.1 2,952,389 - +0.8 2,952,406 + Dsui_2784 0.19 -0.2 2,952,406 + Dsui_2784 0.19 +0.8 2,952,414 - Dsui_2784 0.21 -1.5 2,952,438 - Dsui_2784 0.25 +0.8 2,952,456 + Dsui_2784 0.28 +0.8 2,952,475 + Dsui_2784 0.31 -0.8 2,952,511 - Dsui_2784 0.37 -1.5 2,952,513 + Dsui_2784 0.37 -0.2 2,952,560 + Dsui_2784 0.45 +0.8 2,952,560 + Dsui_2784 0.45 +0.8 2,952,563 + Dsui_2784 0.45 +0.8 2,952,568 - Dsui_2784 0.46 -0.2 2,952,569 + Dsui_2784 0.46 -0.8 2,952,570 + Dsui_2784 0.46 +0.8 2,952,570 + Dsui_2784 0.46 +0.8 2,952,570 + +0.8 2,952,578 - -0.2 2,952,639 - +0.8 2,952,642 + Dsui_2784 0.58 +0.8 2,952,647 + Dsui_2784 0.59 +0.8 2,952,731 - +0.8 2,952,773 + Dsui_2784 0.80 +0.8 2,952,781 - +0.8 2,952,803 + Dsui_2784 0.85 +0.8 2,952,809 - +0.8 2,952,913 + -1.8 2,953,051 - -1.4 2,953,051 - -2.9 2,953,146 - -0.7
Or see this region's nucleotide sequence