Strain Fitness in Dechlorosoma suillum PS around Dsui_2756

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2754 and Dsui_2755 are separated by 110 nucleotidesDsui_2755 and Dsui_2756 are separated by 89 nucleotidesDsui_2756 and Dsui_2757 are separated by 3 nucleotides Dsui_2754: Dsui_2754 - collagenase-like protease, at 2,913,692 to 2,915,578 _2754 Dsui_2755: Dsui_2755 - hypothetical protein, at 2,915,689 to 2,915,889 _2755 Dsui_2756: Dsui_2756 - hypothetical protein, at 2,915,979 to 2,916,593 _2756 Dsui_2757: Dsui_2757 - spermidine synthase, at 2,916,597 to 2,917,403 _2757 Position (kb) 2915 2916 2917Strain fitness (log2 ratio) -3 -2 -1 0 1at 2914.994 kb on - strand, within Dsui_2754at 2915.022 kb on - strand, within Dsui_2754at 2915.106 kb on + strand, within Dsui_2754at 2915.296 kb on - strandat 2915.296 kb on - strand, within Dsui_2754at 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.423 kb on - strandat 2915.467 kb on - strandat 2915.479 kb on - strandat 2915.571 kb on - strandat 2915.639 kb on - strandat 2915.963 kb on - strandat 2915.992 kb on + strandat 2916.035 kb on - strandat 2916.157 kb on + strand, within Dsui_2756at 2916.478 kb on + strand, within Dsui_2756at 2916.505 kb on + strand, within Dsui_2756at 2916.621 kb on - strandat 2916.625 kb on + strandat 2916.627 kb on - strandat 2916.690 kb on + strand, within Dsui_2757at 2916.714 kb on + strand, within Dsui_2757at 2916.714 kb on + strand, within Dsui_2757at 2916.722 kb on - strandat 2916.722 kb on - strandat 2916.854 kb on - strandat 2916.858 kb on + strand, within Dsui_2757at 2916.999 kb on + strand, within Dsui_2757at 2917.061 kb on + strand, within Dsui_2757at 2917.114 kb on + strandat 2917.157 kb on + strand, within Dsui_2757at 2917.157 kb on + strand, within Dsui_2757at 2917.203 kb on - strandat 2917.449 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,914,994 - Dsui_2754 0.69 -2.1
2,915,022 - Dsui_2754 0.70 -1.3
2,915,106 + Dsui_2754 0.75 -0.5
2,915,296 - +0.7
2,915,296 - Dsui_2754 0.85 -0.3
2,915,423 - +0.7
2,915,423 - -1.6
2,915,423 - +0.7
2,915,423 - +0.7
2,915,423 - +0.7
2,915,467 - -0.3
2,915,479 - -1.3
2,915,571 - -1.8
2,915,639 - +0.7
2,915,963 - -0.3
2,915,992 + +0.7
2,916,035 - -0.8
2,916,157 + Dsui_2756 0.29 -0.3
2,916,478 + Dsui_2756 0.81 -3.3
2,916,505 + Dsui_2756 0.86 -2.1
2,916,621 - -0.3
2,916,625 + -1.1
2,916,627 - -0.3
2,916,690 + Dsui_2757 0.12 -0.8
2,916,714 + Dsui_2757 0.14 -1.7
2,916,714 + Dsui_2757 0.14 -2.1
2,916,722 - -0.8
2,916,722 - +0.7
2,916,854 - +0.7
2,916,858 + Dsui_2757 0.32 -0.3
2,916,999 + Dsui_2757 0.50 -1.3
2,917,061 + Dsui_2757 0.57 -0.8
2,917,114 + +0.7
2,917,157 + Dsui_2757 0.69 +0.7
2,917,157 + Dsui_2757 0.69 +0.7
2,917,203 - +0.7
2,917,449 + +0.7

Or see this region's nucleotide sequence