Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2754 and Dsui_2755 are separated by 110 nucleotides Dsui_2755 and Dsui_2756 are separated by 89 nucleotides Dsui_2756 and Dsui_2757 are separated by 3 nucleotides
Dsui_2754: Dsui_2754 - collagenase-like protease, at 2,913,692 to 2,915,578
_2754
Dsui_2755: Dsui_2755 - hypothetical protein, at 2,915,689 to 2,915,889
_2755
Dsui_2756: Dsui_2756 - hypothetical protein, at 2,915,979 to 2,916,593
_2756
Dsui_2757: Dsui_2757 - spermidine synthase, at 2,916,597 to 2,917,403
_2757
Position (kb)
2915
2916
2917 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2914.994 kb on - strand, within Dsui_2754 at 2915.022 kb on - strand, within Dsui_2754 at 2915.106 kb on + strand, within Dsui_2754 at 2915.296 kb on - strand at 2915.296 kb on - strand, within Dsui_2754 at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.423 kb on - strand at 2915.467 kb on - strand at 2915.479 kb on - strand at 2915.571 kb on - strand at 2915.639 kb on - strand at 2915.963 kb on - strand at 2915.992 kb on + strand at 2916.035 kb on - strand at 2916.157 kb on + strand, within Dsui_2756 at 2916.478 kb on + strand, within Dsui_2756 at 2916.505 kb on + strand, within Dsui_2756 at 2916.621 kb on - strand at 2916.625 kb on + strand at 2916.627 kb on - strand at 2916.690 kb on + strand, within Dsui_2757 at 2916.714 kb on + strand, within Dsui_2757 at 2916.714 kb on + strand, within Dsui_2757 at 2916.722 kb on - strand at 2916.722 kb on - strand at 2916.854 kb on - strand at 2916.858 kb on + strand, within Dsui_2757 at 2916.999 kb on + strand, within Dsui_2757 at 2917.061 kb on + strand, within Dsui_2757 at 2917.114 kb on + strand at 2917.157 kb on + strand, within Dsui_2757 at 2917.157 kb on + strand, within Dsui_2757 at 2917.203 kb on - strand at 2917.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 2,914,994 - Dsui_2754 0.69 -2.1 2,915,022 - Dsui_2754 0.70 -1.3 2,915,106 + Dsui_2754 0.75 -0.5 2,915,296 - +0.7 2,915,296 - Dsui_2754 0.85 -0.3 2,915,423 - +0.7 2,915,423 - -1.6 2,915,423 - +0.7 2,915,423 - +0.7 2,915,423 - +0.7 2,915,467 - -0.3 2,915,479 - -1.3 2,915,571 - -1.8 2,915,639 - +0.7 2,915,963 - -0.3 2,915,992 + +0.7 2,916,035 - -0.8 2,916,157 + Dsui_2756 0.29 -0.3 2,916,478 + Dsui_2756 0.81 -3.3 2,916,505 + Dsui_2756 0.86 -2.1 2,916,621 - -0.3 2,916,625 + -1.1 2,916,627 - -0.3 2,916,690 + Dsui_2757 0.12 -0.8 2,916,714 + Dsui_2757 0.14 -1.7 2,916,714 + Dsui_2757 0.14 -2.1 2,916,722 - -0.8 2,916,722 - +0.7 2,916,854 - +0.7 2,916,858 + Dsui_2757 0.32 -0.3 2,916,999 + Dsui_2757 0.50 -1.3 2,917,061 + Dsui_2757 0.57 -0.8 2,917,114 + +0.7 2,917,157 + Dsui_2757 0.69 +0.7 2,917,157 + Dsui_2757 0.69 +0.7 2,917,203 - +0.7 2,917,449 + +0.7
Or see this region's nucleotide sequence