Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2735 and Dsui_2736 are separated by 51 nucleotides Dsui_2736 and Dsui_2737 are separated by 63 nucleotides Dsui_2737 and Dsui_2738 overlap by 8 nucleotides Dsui_2738 and Dsui_2739 are separated by 129 nucleotides Dsui_2739 and Dsui_2740 are separated by 24 nucleotides
Dsui_2735: Dsui_2735 - glycine cleavage system T protein, at 2,889,524 to 2,890,615
_2735
Dsui_2736: Dsui_2736 - glycine cleavage system H protein, at 2,890,667 to 2,891,053
_2736
Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017
_2737
Dsui_2738: Dsui_2738 - glycine cleavage system regulatory protein, at 2,894,010 to 2,894,537
_2738
Dsui_2739: Dsui_2739 - pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component, at 2,894,667 to 2,894,936
_2739
Dsui_2740: Dsui_2740 - putative integral membrane protein, at 2,894,961 to 2,895,698
_2740
Position (kb)
2891
2892
2893
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2890.164 kb on - strand at 2890.169 kb on - strand, within Dsui_2735 at 2890.233 kb on + strand, within Dsui_2735 at 2890.291 kb on + strand, within Dsui_2735 at 2890.291 kb on + strand, within Dsui_2735 at 2890.294 kb on - strand, within Dsui_2735 at 2890.306 kb on + strand, within Dsui_2735 at 2890.314 kb on - strand at 2890.377 kb on + strand, within Dsui_2735 at 2890.390 kb on + strand, within Dsui_2735 at 2890.397 kb on + strand, within Dsui_2735 at 2890.398 kb on - strand at 2890.473 kb on + strand, within Dsui_2735 at 2890.481 kb on - strand, within Dsui_2735 at 2890.481 kb on - strand, within Dsui_2735 at 2890.498 kb on - strand at 2890.563 kb on + strand at 2890.597 kb on + strand at 2890.604 kb on + strand at 2890.612 kb on - strand at 2890.614 kb on + strand at 2890.622 kb on - strand at 2890.622 kb on - strand at 2890.662 kb on + strand at 2890.675 kb on + strand at 2890.676 kb on + strand at 2890.762 kb on + strand, within Dsui_2736 at 2890.772 kb on + strand, within Dsui_2736 at 2890.780 kb on - strand at 2890.818 kb on - strand, within Dsui_2736 at 2890.818 kb on - strand at 2890.938 kb on + strand, within Dsui_2736 at 2890.959 kb on + strand, within Dsui_2736 at 2891.061 kb on + strand at 2891.066 kb on + strand at 2891.071 kb on + strand at 2891.116 kb on - strand at 2891.119 kb on + strand at 2891.119 kb on + strand at 2891.321 kb on + strand at 2891.389 kb on + strand at 2891.415 kb on + strand, within Dsui_2737 at 2891.447 kb on + strand, within Dsui_2737 at 2891.451 kb on + strand, within Dsui_2737 at 2891.474 kb on - strand, within Dsui_2737 at 2891.544 kb on + strand, within Dsui_2737 at 2891.717 kb on - strand, within Dsui_2737 at 2891.761 kb on - strand at 2891.798 kb on + strand, within Dsui_2737 at 2891.906 kb on - strand, within Dsui_2737 at 2892.137 kb on - strand, within Dsui_2737 at 2892.163 kb on - strand, within Dsui_2737 at 2892.247 kb on + strand, within Dsui_2737 at 2892.247 kb on + strand, within Dsui_2737 at 2892.328 kb on + strand, within Dsui_2737 at 2892.328 kb on + strand, within Dsui_2737 at 2892.334 kb on - strand, within Dsui_2737 at 2892.336 kb on - strand at 2892.351 kb on + strand, within Dsui_2737 at 2892.351 kb on + strand, within Dsui_2737 at 2892.536 kb on + strand, within Dsui_2737 at 2892.633 kb on - strand, within Dsui_2737 at 2892.657 kb on + strand, within Dsui_2737 at 2892.753 kb on + strand, within Dsui_2737 at 2892.891 kb on + strand, within Dsui_2737 at 2892.944 kb on - strand, within Dsui_2737 at 2892.978 kb on - strand, within Dsui_2737 at 2893.027 kb on + strand, within Dsui_2737 at 2893.072 kb on + strand, within Dsui_2737 at 2893.158 kb on - strand, within Dsui_2737 at 2893.164 kb on + strand, within Dsui_2737 at 2893.217 kb on + strand, within Dsui_2737 at 2893.402 kb on - strand at 2893.532 kb on + strand, within Dsui_2737 at 2893.535 kb on - strand, within Dsui_2737 at 2893.552 kb on - strand, within Dsui_2737 at 2893.898 kb on + strand at 2894.086 kb on + strand, within Dsui_2738 at 2894.089 kb on + strand, within Dsui_2738 at 2894.161 kb on - strand, within Dsui_2738 at 2894.350 kb on + strand, within Dsui_2738 at 2894.388 kb on + strand, within Dsui_2738 at 2894.388 kb on - strand, within Dsui_2738 at 2894.491 kb on - strand at 2894.564 kb on + strand at 2894.619 kb on + strand at 2894.651 kb on + strand at 2894.659 kb on - strand at 2894.702 kb on - strand, within Dsui_2739 at 2894.774 kb on - strand, within Dsui_2739 at 2894.837 kb on - strand, within Dsui_2739 at 2894.839 kb on + strand at 2895.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 2,890,164 - +0.7 2,890,169 - Dsui_2735 0.59 +0.7 2,890,233 + Dsui_2735 0.65 +0.1 2,890,291 + Dsui_2735 0.70 +0.0 2,890,291 + Dsui_2735 0.70 -0.8 2,890,294 - Dsui_2735 0.71 -0.3 2,890,306 + Dsui_2735 0.72 -0.1 2,890,314 - -0.3 2,890,377 + Dsui_2735 0.78 +0.4 2,890,390 + Dsui_2735 0.79 +0.0 2,890,397 + Dsui_2735 0.80 +0.4 2,890,398 - +0.7 2,890,473 + Dsui_2735 0.87 +0.2 2,890,481 - Dsui_2735 0.88 -0.3 2,890,481 - Dsui_2735 0.88 -0.9 2,890,498 - -1.3 2,890,563 + -0.1 2,890,597 + -0.4 2,890,604 + -0.1 2,890,612 - -0.3 2,890,614 + -1.1 2,890,622 - +0.7 2,890,622 - +0.7 2,890,662 + +0.1 2,890,675 + -0.5 2,890,676 + +0.1 2,890,762 + Dsui_2736 0.25 -0.3 2,890,772 + Dsui_2736 0.27 -0.4 2,890,780 - +0.7 2,890,818 - Dsui_2736 0.39 -0.9 2,890,818 - -0.3 2,890,938 + Dsui_2736 0.70 -0.3 2,890,959 + Dsui_2736 0.75 -0.2 2,891,061 + -0.3 2,891,066 + -0.7 2,891,071 + -1.4 2,891,116 - -1.6 2,891,119 + +0.7 2,891,119 + +0.7 2,891,321 + -1.4 2,891,389 + +0.7 2,891,415 + Dsui_2737 0.10 -0.3 2,891,447 + Dsui_2737 0.11 -2.1 2,891,451 + Dsui_2737 0.12 +0.7 2,891,474 - Dsui_2737 0.12 +0.7 2,891,544 + Dsui_2737 0.15 -0.3 2,891,717 - Dsui_2737 0.21 -0.3 2,891,761 - -0.9 2,891,798 + Dsui_2737 0.23 -0.5 2,891,906 - Dsui_2737 0.27 +0.7 2,892,137 - Dsui_2737 0.35 -0.3 2,892,163 - Dsui_2737 0.36 +0.7 2,892,247 + Dsui_2737 0.39 -1.7 2,892,247 + Dsui_2737 0.39 -0.9 2,892,328 + Dsui_2737 0.42 +0.7 2,892,328 + Dsui_2737 0.42 -1.6 2,892,334 - Dsui_2737 0.42 -0.3 2,892,336 - +0.7 2,892,351 + Dsui_2737 0.43 +0.7 2,892,351 + Dsui_2737 0.43 -1.3 2,892,536 + Dsui_2737 0.49 -1.6 2,892,633 - Dsui_2737 0.52 -0.3 2,892,657 + Dsui_2737 0.53 +0.7 2,892,753 + Dsui_2737 0.56 -1.3 2,892,891 + Dsui_2737 0.61 +1.7 2,892,944 - Dsui_2737 0.63 -0.9 2,892,978 - Dsui_2737 0.64 -1.9 2,893,027 + Dsui_2737 0.66 +2.3 2,893,072 + Dsui_2737 0.67 -1.0 2,893,158 - Dsui_2737 0.70 -1.6 2,893,164 + Dsui_2737 0.71 -0.3 2,893,217 + Dsui_2737 0.72 -2.3 2,893,402 - +0.7 2,893,532 + Dsui_2737 0.83 +2.7 2,893,535 - Dsui_2737 0.83 -1.3 2,893,552 - Dsui_2737 0.84 -0.3 2,893,898 + -1.3 2,894,086 + Dsui_2738 0.14 -0.3 2,894,089 + Dsui_2738 0.15 -2.6 2,894,161 - Dsui_2738 0.29 +0.7 2,894,350 + Dsui_2738 0.64 -0.9 2,894,388 + Dsui_2738 0.72 -0.9 2,894,388 - Dsui_2738 0.72 -0.3 2,894,491 - -2.6 2,894,564 + +0.7 2,894,619 + +0.7 2,894,651 + -0.9 2,894,659 - +0.7 2,894,702 - Dsui_2739 0.13 -0.3 2,894,774 - Dsui_2739 0.40 -0.3 2,894,837 - Dsui_2739 0.63 -0.3 2,894,839 + +0.7 2,895,004 - -0.3
Or see this region's nucleotide sequence