Strain Fitness in Dechlorosoma suillum PS around Dsui_2736

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2735 and Dsui_2736 are separated by 51 nucleotidesDsui_2736 and Dsui_2737 are separated by 63 nucleotides Dsui_2735: Dsui_2735 - glycine cleavage system T protein, at 2,889,524 to 2,890,615 _2735 Dsui_2736: Dsui_2736 - glycine cleavage system H protein, at 2,890,667 to 2,891,053 _2736 Dsui_2737: Dsui_2737 - glycine dehydrogenase, decarboxylating, at 2,891,117 to 2,894,017 _2737 Position (kb) 2890 2891 2892Strain fitness (log2 ratio) -2 -1 0 1at 2889.702 kb on - strandat 2889.775 kb on + strand, within Dsui_2735at 2889.788 kb on - strandat 2889.849 kb on + strand, within Dsui_2735at 2889.889 kb on + strand, within Dsui_2735at 2889.994 kb on + strand, within Dsui_2735at 2890.008 kb on - strand, within Dsui_2735at 2890.060 kb on - strand, within Dsui_2735at 2890.164 kb on - strandat 2890.169 kb on - strand, within Dsui_2735at 2890.233 kb on + strand, within Dsui_2735at 2890.291 kb on + strand, within Dsui_2735at 2890.291 kb on + strand, within Dsui_2735at 2890.294 kb on - strand, within Dsui_2735at 2890.306 kb on + strand, within Dsui_2735at 2890.314 kb on - strandat 2890.377 kb on + strand, within Dsui_2735at 2890.390 kb on + strand, within Dsui_2735at 2890.397 kb on + strand, within Dsui_2735at 2890.398 kb on - strandat 2890.473 kb on + strand, within Dsui_2735at 2890.481 kb on - strand, within Dsui_2735at 2890.481 kb on - strand, within Dsui_2735at 2890.498 kb on - strandat 2890.563 kb on + strandat 2890.597 kb on + strandat 2890.604 kb on + strandat 2890.612 kb on - strandat 2890.614 kb on + strandat 2890.622 kb on - strandat 2890.622 kb on - strandat 2890.662 kb on + strandat 2890.675 kb on + strandat 2890.676 kb on + strandat 2890.762 kb on + strand, within Dsui_2736at 2890.772 kb on + strand, within Dsui_2736at 2890.780 kb on - strandat 2890.818 kb on - strand, within Dsui_2736at 2890.818 kb on - strandat 2890.938 kb on + strand, within Dsui_2736at 2890.959 kb on + strand, within Dsui_2736at 2891.061 kb on + strandat 2891.066 kb on + strandat 2891.071 kb on + strandat 2891.116 kb on - strandat 2891.119 kb on + strandat 2891.119 kb on + strandat 2891.321 kb on + strandat 2891.389 kb on + strandat 2891.415 kb on + strand, within Dsui_2737at 2891.447 kb on + strand, within Dsui_2737at 2891.451 kb on + strand, within Dsui_2737at 2891.474 kb on - strand, within Dsui_2737at 2891.544 kb on + strand, within Dsui_2737at 2891.717 kb on - strand, within Dsui_2737at 2891.761 kb on - strandat 2891.798 kb on + strand, within Dsui_2737at 2891.906 kb on - strand, within Dsui_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,889,702 - +0.7
2,889,775 + Dsui_2735 0.23 -0.4
2,889,788 - -0.3
2,889,849 + Dsui_2735 0.30 -0.5
2,889,889 + Dsui_2735 0.33 -1.9
2,889,994 + Dsui_2735 0.43 -0.1
2,890,008 - Dsui_2735 0.44 -1.6
2,890,060 - Dsui_2735 0.49 +0.7
2,890,164 - +0.7
2,890,169 - Dsui_2735 0.59 +0.7
2,890,233 + Dsui_2735 0.65 +0.1
2,890,291 + Dsui_2735 0.70 +0.0
2,890,291 + Dsui_2735 0.70 -0.8
2,890,294 - Dsui_2735 0.71 -0.3
2,890,306 + Dsui_2735 0.72 -0.1
2,890,314 - -0.3
2,890,377 + Dsui_2735 0.78 +0.4
2,890,390 + Dsui_2735 0.79 +0.0
2,890,397 + Dsui_2735 0.80 +0.4
2,890,398 - +0.7
2,890,473 + Dsui_2735 0.87 +0.2
2,890,481 - Dsui_2735 0.88 -0.3
2,890,481 - Dsui_2735 0.88 -0.9
2,890,498 - -1.3
2,890,563 + -0.1
2,890,597 + -0.4
2,890,604 + -0.1
2,890,612 - -0.3
2,890,614 + -1.1
2,890,622 - +0.7
2,890,622 - +0.7
2,890,662 + +0.1
2,890,675 + -0.5
2,890,676 + +0.1
2,890,762 + Dsui_2736 0.25 -0.3
2,890,772 + Dsui_2736 0.27 -0.4
2,890,780 - +0.7
2,890,818 - Dsui_2736 0.39 -0.9
2,890,818 - -0.3
2,890,938 + Dsui_2736 0.70 -0.3
2,890,959 + Dsui_2736 0.75 -0.2
2,891,061 + -0.3
2,891,066 + -0.7
2,891,071 + -1.4
2,891,116 - -1.6
2,891,119 + +0.7
2,891,119 + +0.7
2,891,321 + -1.4
2,891,389 + +0.7
2,891,415 + Dsui_2737 0.10 -0.3
2,891,447 + Dsui_2737 0.11 -2.1
2,891,451 + Dsui_2737 0.12 +0.7
2,891,474 - Dsui_2737 0.12 +0.7
2,891,544 + Dsui_2737 0.15 -0.3
2,891,717 - Dsui_2737 0.21 -0.3
2,891,761 - -0.9
2,891,798 + Dsui_2737 0.23 -0.5
2,891,906 - Dsui_2737 0.27 +0.7

Or see this region's nucleotide sequence