Strain Fitness in Dechlorosoma suillum PS around Dsui_2732

Experiment: ALP with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2730 and Dsui_2731 are separated by 11 nucleotidesDsui_2731 and Dsui_2732 are separated by 79 nucleotidesDsui_2732 and Dsui_2733 are separated by 56 nucleotidesDsui_2733 and Dsui_2734 are separated by 137 nucleotides Dsui_2730: Dsui_2730 - Sua5/YciO/YrdC/YwlC family protein, at 2,885,653 to 2,886,276 _2730 Dsui_2731: Dsui_2731 - putative metal-dependent phosphoesterase, PHP family, at 2,886,288 to 2,887,127 _2731 Dsui_2732: Dsui_2732 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 2,887,207 to 2,888,073 _2732 Dsui_2733: Dsui_2733 - bacterioferritin, at 2,888,130 to 2,888,603 _2733 Dsui_2734: Dsui_2734 - bacterioferritin-associated ferredoxin, at 2,888,741 to 2,888,947 _2734 Position (kb) 2887 2888 2889Strain fitness (log2 ratio) -2 -1 0 1at 2886.226 kb on - strandat 2886.226 kb on - strandat 2886.266 kb on + strandat 2886.319 kb on - strandat 2886.319 kb on - strandat 2886.339 kb on - strandat 2886.352 kb on + strandat 2886.362 kb on + strandat 2886.365 kb on - strandat 2886.365 kb on - strandat 2886.453 kb on - strand, within Dsui_2731at 2886.485 kb on - strand, within Dsui_2731at 2886.498 kb on - strand, within Dsui_2731at 2886.513 kb on + strand, within Dsui_2731at 2886.608 kb on - strand, within Dsui_2731at 2886.610 kb on + strand, within Dsui_2731at 2886.618 kb on - strand, within Dsui_2731at 2886.628 kb on - strand, within Dsui_2731at 2886.642 kb on - strand, within Dsui_2731at 2886.676 kb on + strand, within Dsui_2731at 2886.789 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.945 kb on - strand, within Dsui_2731at 2886.948 kb on + strand, within Dsui_2731at 2887.019 kb on - strand, within Dsui_2731at 2887.131 kb on - strandat 2887.149 kb on + strandat 2887.149 kb on + strandat 2887.501 kb on - strand, within Dsui_2732at 2887.516 kb on - strand, within Dsui_2732at 2887.555 kb on - strand, within Dsui_2732at 2887.572 kb on - strandat 2887.614 kb on - strand, within Dsui_2732at 2887.677 kb on - strand, within Dsui_2732at 2887.706 kb on - strand, within Dsui_2732at 2887.926 kb on - strand, within Dsui_2732at 2888.030 kb on - strandat 2888.101 kb on + strandat 2888.314 kb on - strand, within Dsui_2733at 2888.405 kb on - strand, within Dsui_2733at 2888.444 kb on + strand, within Dsui_2733at 2888.698 kb on - strandat 2888.815 kb on + strand, within Dsui_2734at 2888.856 kb on - strand, within Dsui_2734at 2888.856 kb on - strand, within Dsui_2734at 2888.947 kb on - strandat 2888.964 kb on - strandat 2888.964 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
remove
2,886,226 - -0.4
2,886,226 - -0.3
2,886,266 + -1.9
2,886,319 - -0.7
2,886,319 - -0.3
2,886,339 - -0.6
2,886,352 + -0.9
2,886,362 + -0.3
2,886,365 - -0.2
2,886,365 - -0.1
2,886,453 - Dsui_2731 0.20 -0.1
2,886,485 - Dsui_2731 0.23 -0.5
2,886,498 - Dsui_2731 0.25 -0.0
2,886,513 + Dsui_2731 0.27 -1.3
2,886,608 - Dsui_2731 0.38 -0.4
2,886,610 + Dsui_2731 0.38 -0.9
2,886,618 - Dsui_2731 0.39 -0.0
2,886,628 - Dsui_2731 0.40 -0.5
2,886,642 - Dsui_2731 0.42 -0.2
2,886,676 + Dsui_2731 0.46 -0.3
2,886,789 - Dsui_2731 0.60 +0.3
2,886,945 - Dsui_2731 0.78 -0.2
2,886,945 - Dsui_2731 0.78 -0.6
2,886,945 - Dsui_2731 0.78 -0.7
2,886,948 + Dsui_2731 0.79 -1.6
2,887,019 - Dsui_2731 0.87 -0.7
2,887,131 - -0.2
2,887,149 + -1.3
2,887,149 + +0.7
2,887,501 - Dsui_2732 0.34 -1.3
2,887,516 - Dsui_2732 0.36 -0.3
2,887,555 - Dsui_2732 0.40 -0.9
2,887,572 - +0.7
2,887,614 - Dsui_2732 0.47 -2.1
2,887,677 - Dsui_2732 0.54 -0.3
2,887,706 - Dsui_2732 0.58 -0.9
2,887,926 - Dsui_2732 0.83 -1.6
2,888,030 - -0.3
2,888,101 + -0.3
2,888,314 - Dsui_2733 0.39 -0.3
2,888,405 - Dsui_2733 0.58 -0.5
2,888,444 + Dsui_2733 0.66 +0.7
2,888,698 - -0.5
2,888,815 + Dsui_2734 0.36 +0.7
2,888,856 - Dsui_2734 0.56 -0.2
2,888,856 - Dsui_2734 0.56 +0.1
2,888,947 - -0.2
2,888,964 - -0.3
2,888,964 - -0.5

Or see this region's nucleotide sequence