Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2629 and Dsui_2630 overlap by 4 nucleotides Dsui_2630 and Dsui_2631 are separated by 8 nucleotides Dsui_2631 and Dsui_2632 are separated by 44 nucleotides Dsui_2632 and Dsui_2633 are separated by 76 nucleotides
Dsui_2629: Dsui_2629 - HD-GYP domain-containing protein, at 2,781,200 to 2,782,510
_2629
Dsui_2630: Dsui_2630 - flagellar basal-body rod protein FlgB, at 2,782,507 to 2,783,145
_2630
Dsui_2631: Dsui_2631 - hypothetical protein, at 2,783,154 to 2,783,396
_2631
Dsui_2632: Dsui_2632 - hypothetical protein, at 2,783,441 to 2,783,689
_2632
Dsui_2633: Dsui_2633 - hypothetical protein, at 2,783,766 to 2,784,023
_2633
Position (kb)
2783
2784 Strain fitness (log2 ratio)
-2
-1
0
1 at 2782.167 kb on - strand, within Dsui_2629 at 2782.294 kb on - strand, within Dsui_2629 at 2782.302 kb on - strand, within Dsui_2629 at 2782.310 kb on - strand, within Dsui_2629 at 2782.323 kb on - strand, within Dsui_2629 at 2782.365 kb on + strand, within Dsui_2629 at 2782.378 kb on - strand, within Dsui_2629 at 2782.383 kb on - strand at 2782.485 kb on - strand at 2782.495 kb on + strand at 2782.496 kb on + strand at 2782.503 kb on - strand at 2782.503 kb on - strand at 2782.503 kb on - strand at 2782.503 kb on - strand at 2782.511 kb on + strand at 2782.537 kb on - strand at 2782.656 kb on + strand, within Dsui_2630 at 2782.694 kb on + strand, within Dsui_2630 at 2782.702 kb on - strand, within Dsui_2630 at 2782.888 kb on + strand, within Dsui_2630 at 2783.061 kb on + strand, within Dsui_2630 at 2783.061 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.066 kb on + strand, within Dsui_2630 at 2783.074 kb on + strand, within Dsui_2630 at 2783.084 kb on - strand at 2783.086 kb on + strand at 2783.106 kb on - strand at 2783.129 kb on + strand at 2783.184 kb on - strand, within Dsui_2631 at 2783.184 kb on - strand, within Dsui_2631 at 2783.329 kb on - strand, within Dsui_2631 at 2783.380 kb on + strand at 2783.426 kb on - strand at 2783.461 kb on + strand at 2783.480 kb on - strand, within Dsui_2632 at 2783.480 kb on - strand, within Dsui_2632 at 2783.705 kb on + strand at 2783.705 kb on + strand at 2783.708 kb on - strand at 2783.852 kb on - strand, within Dsui_2633 at 2783.872 kb on + strand, within Dsui_2633 at 2783.904 kb on + strand, within Dsui_2633 at 2783.967 kb on + strand, within Dsui_2633 at 2783.975 kb on - strand, within Dsui_2633 at 2783.975 kb on - strand, within Dsui_2633 at 2783.976 kb on - strand, within Dsui_2633 at 2783.987 kb on + strand, within Dsui_2633 at 2784.000 kb on + strand at 2784.055 kb on - strand at 2784.071 kb on + strand at 2784.084 kb on - strand at 2784.092 kb on + strand at 2784.100 kb on - strand at 2784.100 kb on - strand at 2784.144 kb on + strand at 2784.157 kb on - strand at 2784.159 kb on + strand at 2784.159 kb on + strand at 2784.215 kb on - strand at 2784.217 kb on - strand at 2784.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 2,782,167 - Dsui_2629 0.74 -0.3 2,782,294 - Dsui_2629 0.83 -1.3 2,782,302 - Dsui_2629 0.84 -1.6 2,782,310 - Dsui_2629 0.85 -0.3 2,782,323 - Dsui_2629 0.86 -1.6 2,782,365 + Dsui_2629 0.89 +0.7 2,782,378 - Dsui_2629 0.90 +0.7 2,782,383 - -0.3 2,782,485 - -0.3 2,782,495 + +0.7 2,782,496 + +0.7 2,782,503 - -0.9 2,782,503 - +0.7 2,782,503 - +0.7 2,782,503 - +0.7 2,782,511 + +0.7 2,782,537 - +0.7 2,782,656 + Dsui_2630 0.23 -0.3 2,782,694 + Dsui_2630 0.29 -2.1 2,782,702 - Dsui_2630 0.31 +0.7 2,782,888 + Dsui_2630 0.60 -0.9 2,783,061 + Dsui_2630 0.87 +0.7 2,783,061 + Dsui_2630 0.87 -1.9 2,783,066 + Dsui_2630 0.87 +0.7 2,783,066 + Dsui_2630 0.87 -1.9 2,783,066 + Dsui_2630 0.87 +0.7 2,783,066 + Dsui_2630 0.87 +0.7 2,783,074 + Dsui_2630 0.89 -0.3 2,783,084 - +0.7 2,783,086 + -0.9 2,783,106 - +0.7 2,783,129 + +0.7 2,783,184 - Dsui_2631 0.12 -0.3 2,783,184 - Dsui_2631 0.12 -0.3 2,783,329 - Dsui_2631 0.72 -1.3 2,783,380 + +0.7 2,783,426 - +0.7 2,783,461 + -0.3 2,783,480 - Dsui_2632 0.16 -2.3 2,783,480 - Dsui_2632 0.16 +0.7 2,783,705 + +0.7 2,783,705 + -0.9 2,783,708 - -0.9 2,783,852 - Dsui_2633 0.33 -0.3 2,783,872 + Dsui_2633 0.41 +0.7 2,783,904 + Dsui_2633 0.53 -0.9 2,783,967 + Dsui_2633 0.78 -1.9 2,783,975 - Dsui_2633 0.81 +0.7 2,783,975 - Dsui_2633 0.81 +0.7 2,783,976 - Dsui_2633 0.81 -0.3 2,783,987 + Dsui_2633 0.86 +0.7 2,784,000 + +0.7 2,784,055 - +0.7 2,784,071 + +0.7 2,784,084 - +0.7 2,784,092 + -1.6 2,784,100 - -0.9 2,784,100 - -0.9 2,784,144 + +0.7 2,784,157 - +0.7 2,784,159 + -0.3 2,784,159 + -0.3 2,784,215 - -0.3 2,784,217 - +0.7 2,784,359 + -0.9
Or see this region's nucleotide sequence