Strain Fitness in Dechlorosoma suillum PS around Dsui_2530

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2528 and Dsui_2529 are separated by 67 nucleotidesDsui_2529 and Dsui_2530 are separated by 55 nucleotidesDsui_2530 and Dsui_2531 overlap by 20 nucleotidesDsui_2531 and Dsui_2532 are separated by 93 nucleotides Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186 _2528 Dsui_2529: Dsui_2529 - outer membrane assembly lipoprotein YfiO, at 2,681,254 to 2,682,051 _2529 Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234 _2530 Dsui_2531: Dsui_2531 - uncharacterized protein, YfiH family, at 2,683,215 to 2,683,964 _2531 Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083 _2532 Position (kb) 2682 2683 2684Strain fitness (log2 ratio) -2 -1 0 1 2at 2681.135 kb on + strandat 2681.152 kb on + strandat 2681.189 kb on - strandat 2681.239 kb on + strandat 2681.279 kb on + strandat 2681.284 kb on + strandat 2682.191 kb on - strandat 2682.365 kb on + strand, within Dsui_2530at 2682.528 kb on + strand, within Dsui_2530at 2682.536 kb on - strandat 2682.619 kb on + strand, within Dsui_2530at 2682.627 kb on - strand, within Dsui_2530at 2682.628 kb on - strandat 2682.657 kb on - strandat 2682.774 kb on + strand, within Dsui_2530at 2682.984 kb on + strand, within Dsui_2530at 2683.003 kb on - strand, within Dsui_2530at 2683.026 kb on + strand, within Dsui_2530at 2683.028 kb on + strand, within Dsui_2530at 2683.084 kb on + strand, within Dsui_2530at 2683.263 kb on + strandat 2683.266 kb on - strandat 2683.320 kb on + strand, within Dsui_2531at 2683.451 kb on + strand, within Dsui_2531at 2683.573 kb on + strand, within Dsui_2531at 2683.667 kb on + strand, within Dsui_2531at 2683.942 kb on + strandat 2683.958 kb on + strandat 2684.097 kb on - strandat 2684.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,681,135 + -1.3
2,681,152 + +0.7
2,681,189 - -0.8
2,681,239 + +0.7
2,681,279 + +0.7
2,681,284 + -1.8
2,682,191 - -0.3
2,682,365 + Dsui_2530 0.23 +2.0
2,682,528 + Dsui_2530 0.37 +2.0
2,682,536 - -0.8
2,682,619 + Dsui_2530 0.45 +1.3
2,682,627 - Dsui_2530 0.46 -0.8
2,682,628 - +0.7
2,682,657 - +0.7
2,682,774 + Dsui_2530 0.59 +1.9
2,682,984 + Dsui_2530 0.78 +1.9
2,683,003 - Dsui_2530 0.79 -1.6
2,683,026 + Dsui_2530 0.81 +1.9
2,683,028 + Dsui_2530 0.82 +1.9
2,683,084 + Dsui_2530 0.87 -0.9
2,683,263 + -0.7
2,683,266 - -0.3
2,683,320 + Dsui_2531 0.14 -0.3
2,683,451 + Dsui_2531 0.31 -0.6
2,683,573 + Dsui_2531 0.48 -0.3
2,683,667 + Dsui_2531 0.60 +0.7
2,683,942 + -1.6
2,683,958 + +0.2
2,684,097 - -0.8
2,684,230 - +0.7

Or see this region's nucleotide sequence