Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2528 and Dsui_2529 are separated by 67 nucleotides Dsui_2529 and Dsui_2530 are separated by 55 nucleotides Dsui_2530 and Dsui_2531 overlap by 20 nucleotides Dsui_2531 and Dsui_2532 are separated by 93 nucleotides
Dsui_2528: Dsui_2528 - putative signal transduction protein, at 2,679,171 to 2,681,186
_2528
Dsui_2529: Dsui_2529 - outer membrane assembly lipoprotein YfiO, at 2,681,254 to 2,682,051
_2529
Dsui_2530: Dsui_2530 - pseudouridine synthase, RluA family, at 2,682,107 to 2,683,234
_2530
Dsui_2531: Dsui_2531 - uncharacterized protein, YfiH family, at 2,683,215 to 2,683,964
_2531
Dsui_2532: Dsui_2532 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 2,684,058 to 2,685,083
_2532
Position (kb)
2682
2683
2684 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2681.135 kb on + strand at 2681.152 kb on + strand at 2681.189 kb on - strand at 2681.239 kb on + strand at 2681.279 kb on + strand at 2681.284 kb on + strand at 2682.191 kb on - strand at 2682.365 kb on + strand, within Dsui_2530 at 2682.528 kb on + strand, within Dsui_2530 at 2682.536 kb on - strand at 2682.619 kb on + strand, within Dsui_2530 at 2682.627 kb on - strand, within Dsui_2530 at 2682.628 kb on - strand at 2682.657 kb on - strand at 2682.774 kb on + strand, within Dsui_2530 at 2682.984 kb on + strand, within Dsui_2530 at 2683.003 kb on - strand, within Dsui_2530 at 2683.026 kb on + strand, within Dsui_2530 at 2683.028 kb on + strand, within Dsui_2530 at 2683.084 kb on + strand, within Dsui_2530 at 2683.263 kb on + strand at 2683.266 kb on - strand at 2683.320 kb on + strand, within Dsui_2531 at 2683.451 kb on + strand, within Dsui_2531 at 2683.573 kb on + strand, within Dsui_2531 at 2683.667 kb on + strand, within Dsui_2531 at 2683.942 kb on + strand at 2683.958 kb on + strand at 2684.097 kb on - strand at 2684.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 2,681,135 + -1.3 2,681,152 + +0.7 2,681,189 - -0.8 2,681,239 + +0.7 2,681,279 + +0.7 2,681,284 + -1.8 2,682,191 - -0.3 2,682,365 + Dsui_2530 0.23 +2.0 2,682,528 + Dsui_2530 0.37 +2.0 2,682,536 - -0.8 2,682,619 + Dsui_2530 0.45 +1.3 2,682,627 - Dsui_2530 0.46 -0.8 2,682,628 - +0.7 2,682,657 - +0.7 2,682,774 + Dsui_2530 0.59 +1.9 2,682,984 + Dsui_2530 0.78 +1.9 2,683,003 - Dsui_2530 0.79 -1.6 2,683,026 + Dsui_2530 0.81 +1.9 2,683,028 + Dsui_2530 0.82 +1.9 2,683,084 + Dsui_2530 0.87 -0.9 2,683,263 + -0.7 2,683,266 - -0.3 2,683,320 + Dsui_2531 0.14 -0.3 2,683,451 + Dsui_2531 0.31 -0.6 2,683,573 + Dsui_2531 0.48 -0.3 2,683,667 + Dsui_2531 0.60 +0.7 2,683,942 + -1.6 2,683,958 + +0.2 2,684,097 - -0.8 2,684,230 - +0.7
Or see this region's nucleotide sequence