Strain Fitness in Dechlorosoma suillum PS around Dsui_2389

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2387 and Dsui_2388 overlap by 14 nucleotidesDsui_2388 and Dsui_2389 are separated by 23 nucleotidesDsui_2389 and Dsui_2390 are separated by 101 nucleotidesDsui_2390 and Dsui_2391 overlap by 4 nucleotides Dsui_2387: Dsui_2387 - hypothetical protein, at 2,540,017 to 2,540,622 _2387 Dsui_2388: Dsui_2388 - putative dioxygenase, at 2,540,609 to 2,541,415 _2388 Dsui_2389: Dsui_2389 - putative membrane protein, at 2,541,439 to 2,542,710 _2389 Dsui_2390: Dsui_2390 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,542,812 to 2,543,528 _2390 Dsui_2391: Dsui_2391 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 2,543,525 to 2,544,013 _2391 Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -3 -2 -1 0 1at 2540.559 kb on - strandat 2540.610 kb on + strandat 2540.637 kb on - strandat 2540.855 kb on - strand, within Dsui_2388at 2540.979 kb on - strand, within Dsui_2388at 2541.025 kb on + strandat 2541.180 kb on - strandat 2541.506 kb on - strandat 2541.558 kb on - strandat 2541.660 kb on + strandat 2541.774 kb on - strand, within Dsui_2389at 2541.931 kb on - strandat 2541.960 kb on + strandat 2541.997 kb on - strand, within Dsui_2389at 2542.019 kb on + strandat 2542.034 kb on + strandat 2542.092 kb on - strand, within Dsui_2389at 2542.149 kb on - strand, within Dsui_2389at 2542.181 kb on - strand, within Dsui_2389at 2542.218 kb on - strand, within Dsui_2389at 2542.345 kb on - strand, within Dsui_2389at 2542.374 kb on + strand, within Dsui_2389at 2542.430 kb on - strandat 2542.579 kb on - strand, within Dsui_2389at 2542.583 kb on - strandat 2542.583 kb on - strandat 2542.629 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.652 kb on - strandat 2542.786 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,540,559 - +0.8
2,540,610 + +0.8
2,540,637 - -2.7
2,540,855 - Dsui_2388 0.30 -2.2
2,540,979 - Dsui_2388 0.46 -0.2
2,541,025 + -1.2
2,541,180 - +0.8
2,541,506 - -1.5
2,541,558 - -0.8
2,541,660 + -0.2
2,541,774 - Dsui_2389 0.26 -0.2
2,541,931 - +0.8
2,541,960 + +0.8
2,541,997 - Dsui_2389 0.44 -2.9
2,542,019 + -1.2
2,542,034 + +0.8
2,542,092 - Dsui_2389 0.51 -0.8
2,542,149 - Dsui_2389 0.56 -0.2
2,542,181 - Dsui_2389 0.58 -0.8
2,542,218 - Dsui_2389 0.61 +0.8
2,542,345 - Dsui_2389 0.71 -0.8
2,542,374 + Dsui_2389 0.74 -0.8
2,542,430 - +0.8
2,542,579 - Dsui_2389 0.90 -2.7
2,542,583 - -0.2
2,542,583 - -1.8
2,542,629 - +0.8
2,542,652 - -2.4
2,542,652 - +0.8
2,542,652 - +0.8
2,542,652 - +0.8
2,542,652 - +0.8
2,542,652 - -0.8
2,542,652 - +0.8
2,542,786 - -0.8

Or see this region's nucleotide sequence