Strain Fitness in Dechlorosoma suillum PS around Dsui_2386

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2385 and Dsui_2386 are separated by 111 nucleotidesDsui_2386 and Dsui_2387 overlap by 4 nucleotidesDsui_2387 and Dsui_2388 overlap by 14 nucleotides Dsui_2385: Dsui_2385 - transcription-repair coupling factor Mfd, at 2,535,212 to 2,538,808 _2385 Dsui_2386: Dsui_2386 - pyruvate-formate lyase-activating enzyme, at 2,538,920 to 2,540,020 _2386 Dsui_2387: Dsui_2387 - hypothetical protein, at 2,540,017 to 2,540,622 _2387 Dsui_2388: Dsui_2388 - putative dioxygenase, at 2,540,609 to 2,541,415 _2388 Position (kb) 2538 2539 2540 2541Strain fitness (log2 ratio) -2 -1 0 1at 2538.098 kb on - strand, within Dsui_2385at 2538.103 kb on - strand, within Dsui_2385at 2538.121 kb on + strandat 2538.128 kb on - strand, within Dsui_2385at 2538.370 kb on - strand, within Dsui_2385at 2538.556 kb on - strandat 2538.648 kb on + strandat 2539.039 kb on + strandat 2539.047 kb on - strand, within Dsui_2386at 2539.047 kb on - strand, within Dsui_2386at 2539.047 kb on - strandat 2539.048 kb on + strandat 2539.098 kb on - strand, within Dsui_2386at 2539.320 kb on - strandat 2539.331 kb on - strandat 2539.403 kb on - strandat 2539.451 kb on - strandat 2539.451 kb on - strandat 2539.625 kb on - strand, within Dsui_2386at 2539.632 kb on - strand, within Dsui_2386at 2539.632 kb on - strand, within Dsui_2386at 2539.770 kb on - strand, within Dsui_2386at 2539.786 kb on + strandat 2540.388 kb on - strand, within Dsui_2387at 2540.559 kb on - strandat 2540.610 kb on + strandat 2540.637 kb on - strandat 2540.855 kb on - strand, within Dsui_2388at 2540.979 kb on - strand, within Dsui_2388

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,538,098 - Dsui_2385 0.80 -0.7
2,538,103 - Dsui_2385 0.80 -0.1
2,538,121 + -0.8
2,538,128 - Dsui_2385 0.81 -0.7
2,538,370 - Dsui_2385 0.88 -0.6
2,538,556 - -1.2
2,538,648 + -0.8
2,539,039 + +0.8
2,539,047 - Dsui_2386 0.12 -0.2
2,539,047 - Dsui_2386 0.12 -1.5
2,539,047 - +0.8
2,539,048 + +0.8
2,539,098 - Dsui_2386 0.16 +0.8
2,539,320 - -0.2
2,539,331 - +0.8
2,539,403 - +0.8
2,539,451 - -0.8
2,539,451 - +0.8
2,539,625 - Dsui_2386 0.64 -0.8
2,539,632 - Dsui_2386 0.65 +0.8
2,539,632 - Dsui_2386 0.65 +0.8
2,539,770 - Dsui_2386 0.77 -0.8
2,539,786 + -0.2
2,540,388 - Dsui_2387 0.61 -0.2
2,540,559 - +0.8
2,540,610 + +0.8
2,540,637 - -2.7
2,540,855 - Dsui_2388 0.30 -2.2
2,540,979 - Dsui_2388 0.46 -0.2

Or see this region's nucleotide sequence