Strain Fitness in Dechlorosoma suillum PS around Dsui_2295

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2293 and Dsui_2294 are separated by 51 nucleotidesDsui_2294 and Dsui_2295 are separated by 169 nucleotidesDsui_2295 and Dsui_2296 are separated by 304 nucleotides Dsui_2293: Dsui_2293 - poly(3-hydroxyalkanoate) synthetase, at 2,446,699 to 2,448,483 _2293 Dsui_2294: Dsui_2294 - phasin family protein, at 2,448,535 to 2,449,032 _2294 Dsui_2295: Dsui_2295 - transcriptional regulator, at 2,449,202 to 2,449,843 _2295 Dsui_2296: Dsui_2296 - chemotaxis protein, at 2,450,148 to 2,450,747 _2296 Position (kb) 2449 2450Strain fitness (log2 ratio) -2 -1 0 1at 2448.331 kb on - strandat 2448.367 kb on + strandat 2448.384 kb on - strandat 2448.478 kb on + strandat 2448.487 kb on - strandat 2448.603 kb on - strand, within Dsui_2294at 2448.797 kb on + strand, within Dsui_2294at 2448.803 kb on - strand, within Dsui_2294at 2448.804 kb on - strand, within Dsui_2294at 2448.805 kb on - strand, within Dsui_2294at 2448.805 kb on - strand, within Dsui_2294at 2448.968 kb on - strand, within Dsui_2294at 2449.042 kb on - strandat 2449.162 kb on + strandat 2449.263 kb on + strandat 2449.506 kb on + strand, within Dsui_2295at 2449.890 kb on - strandat 2449.898 kb on + strandat 2450.150 kb on - strandat 2450.187 kb on + strandat 2450.214 kb on + strand, within Dsui_2296at 2450.420 kb on + strand, within Dsui_2296at 2450.487 kb on + strand, within Dsui_2296at 2450.563 kb on + strand, within Dsui_2296at 2450.674 kb on - strandat 2450.741 kb on + strandat 2450.839 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,448,331 - -1.2
2,448,367 + +0.8
2,448,384 - +0.8
2,448,478 + +0.8
2,448,487 - -0.8
2,448,603 - Dsui_2294 0.14 +1.6
2,448,797 + Dsui_2294 0.53 -0.2
2,448,803 - Dsui_2294 0.54 +1.4
2,448,804 - Dsui_2294 0.54 -1.2
2,448,805 - Dsui_2294 0.54 -0.2
2,448,805 - Dsui_2294 0.54 +0.8
2,448,968 - Dsui_2294 0.87 +0.8
2,449,042 - +0.8
2,449,162 + +0.8
2,449,263 + -0.2
2,449,506 + Dsui_2295 0.47 -2.3
2,449,890 - +0.8
2,449,898 + +0.8
2,450,150 - -0.2
2,450,187 + -0.7
2,450,214 + Dsui_2296 0.11 -2.2
2,450,420 + Dsui_2296 0.45 +0.2
2,450,487 + Dsui_2296 0.56 -1.4
2,450,563 + Dsui_2296 0.69 +0.2
2,450,674 - +0.8
2,450,741 + -0.1
2,450,839 - +0.8

Or see this region's nucleotide sequence