Strain Fitness in Dechlorosoma suillum PS around Dsui_2197

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2195 and Dsui_2196 are separated by 125 nucleotidesDsui_2196 and Dsui_2197 are separated by 15 nucleotidesDsui_2197 and Dsui_2198 are separated by 114 nucleotides Dsui_2195: Dsui_2195 - trigger factor, at 2,330,596 to 2,331,900 _2195 Dsui_2196: Dsui_2196 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 2,332,026 to 2,332,667 _2196 Dsui_2197: Dsui_2197 - endopeptidase Clp ATP-binding regulatory subunit ClpX, at 2,332,683 to 2,333,957 _2197 Dsui_2198: Dsui_2198 - ATP-dependent protease La, at 2,334,072 to 2,336,489 _2198 Position (kb) 2332 2333 2334Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2331.684 kb on + strand, within Dsui_2195at 2331.697 kb on - strandat 2331.699 kb on + strand, within Dsui_2195at 2331.699 kb on + strand, within Dsui_2195at 2331.751 kb on + strand, within Dsui_2195at 2331.808 kb on + strandat 2331.982 kb on + strandat 2331.990 kb on + strandat 2331.990 kb on + strandat 2331.990 kb on - strandat 2331.997 kb on - strandat 2332.062 kb on + strandat 2332.064 kb on - strandat 2332.070 kb on - strandat 2332.071 kb on - strandat 2332.143 kb on - strand, within Dsui_2196at 2332.146 kb on + strand, within Dsui_2196at 2332.158 kb on - strand, within Dsui_2196at 2332.183 kb on + strand, within Dsui_2196at 2332.385 kb on + strand, within Dsui_2196at 2332.608 kb on + strandat 2332.629 kb on + strandat 2332.629 kb on + strandat 2332.637 kb on - strandat 2332.639 kb on + strandat 2332.639 kb on + strandat 2332.726 kb on - strandat 2332.750 kb on - strandat 2332.876 kb on - strand, within Dsui_2197at 2332.903 kb on + strand, within Dsui_2197at 2332.959 kb on + strand, within Dsui_2197at 2332.967 kb on - strand, within Dsui_2197at 2333.032 kb on - strand, within Dsui_2197at 2333.037 kb on - strand, within Dsui_2197at 2333.052 kb on - strandat 2333.080 kb on + strand, within Dsui_2197at 2333.087 kb on - strand, within Dsui_2197at 2333.122 kb on - strand, within Dsui_2197at 2333.132 kb on + strand, within Dsui_2197at 2333.281 kb on - strand, within Dsui_2197at 2333.321 kb on + strand, within Dsui_2197at 2333.321 kb on + strand, within Dsui_2197at 2333.321 kb on + strand, within Dsui_2197at 2333.328 kb on - strand, within Dsui_2197at 2333.357 kb on + strand, within Dsui_2197at 2333.446 kb on + strand, within Dsui_2197at 2333.505 kb on - strandat 2333.510 kb on + strand, within Dsui_2197at 2333.541 kb on + strand, within Dsui_2197at 2333.541 kb on + strand, within Dsui_2197at 2333.560 kb on + strand, within Dsui_2197at 2333.636 kb on + strand, within Dsui_2197at 2333.644 kb on - strand, within Dsui_2197at 2333.695 kb on + strand, within Dsui_2197at 2333.705 kb on - strand, within Dsui_2197at 2333.718 kb on - strand, within Dsui_2197at 2333.825 kb on + strand, within Dsui_2197at 2333.833 kb on + strandat 2333.918 kb on + strandat 2333.918 kb on + strandat 2333.931 kb on - strandat 2333.933 kb on + strandat 2333.933 kb on + strandat 2334.002 kb on + strandat 2334.038 kb on + strandat 2334.038 kb on + strandat 2334.046 kb on - strandat 2334.071 kb on - strandat 2334.079 kb on + strandat 2334.108 kb on + strandat 2334.108 kb on + strandat 2334.628 kb on + strand, within Dsui_2198at 2334.745 kb on + strand, within Dsui_2198at 2334.755 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.779 kb on + strand, within Dsui_2198at 2334.787 kb on - strandat 2334.908 kb on + strand, within Dsui_2198

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,331,684 + Dsui_2195 0.83 -1.3
2,331,697 - +1.0
2,331,699 + Dsui_2195 0.85 -1.9
2,331,699 + Dsui_2195 0.85 -2.3
2,331,751 + Dsui_2195 0.89 -1.8
2,331,808 + -1.6
2,331,982 + -0.2
2,331,990 + -0.2
2,331,990 + -0.1
2,331,990 - +0.0
2,331,997 - +0.0
2,332,062 + -2.4
2,332,064 - +1.0
2,332,070 - +1.0
2,332,071 - +1.0
2,332,143 - Dsui_2196 0.18 +0.0
2,332,146 + Dsui_2196 0.19 -2.8
2,332,158 - Dsui_2196 0.21 -1.0
2,332,183 + Dsui_2196 0.24 -1.4
2,332,385 + Dsui_2196 0.56 -1.5
2,332,608 + -5.6
2,332,629 + -4.9
2,332,629 + -2.6
2,332,637 - +1.0
2,332,639 + -1.0
2,332,639 + -1.0
2,332,726 - +1.0
2,332,750 - -1.0
2,332,876 - Dsui_2197 0.15 +1.0
2,332,903 + Dsui_2197 0.17 -2.2
2,332,959 + Dsui_2197 0.22 -2.1
2,332,967 - Dsui_2197 0.22 +1.0
2,333,032 - Dsui_2197 0.27 +1.0
2,333,037 - Dsui_2197 0.28 +1.0
2,333,052 - +1.0
2,333,080 + Dsui_2197 0.31 -2.0
2,333,087 - Dsui_2197 0.32 -1.6
2,333,122 - Dsui_2197 0.34 +1.0
2,333,132 + Dsui_2197 0.35 -1.8
2,333,281 - Dsui_2197 0.47 +0.0
2,333,321 + Dsui_2197 0.50 -2.5
2,333,321 + Dsui_2197 0.50 -1.8
2,333,321 + Dsui_2197 0.50 -2.0
2,333,328 - Dsui_2197 0.51 +1.0
2,333,357 + Dsui_2197 0.53 -2.7
2,333,446 + Dsui_2197 0.60 -1.6
2,333,505 - +1.0
2,333,510 + Dsui_2197 0.65 -2.3
2,333,541 + Dsui_2197 0.67 -2.0
2,333,541 + Dsui_2197 0.67 -2.0
2,333,560 + Dsui_2197 0.69 -2.3
2,333,636 + Dsui_2197 0.75 -1.3
2,333,644 - Dsui_2197 0.75 -1.8
2,333,695 + Dsui_2197 0.79 -2.8
2,333,705 - Dsui_2197 0.80 +1.0
2,333,718 - Dsui_2197 0.81 +1.0
2,333,825 + Dsui_2197 0.90 -2.1
2,333,833 + -2.2
2,333,918 + -0.1
2,333,918 + +0.5
2,333,931 - -2.0
2,333,933 + -0.9
2,333,933 + -0.6
2,334,002 + -0.9
2,334,038 + -0.6
2,334,038 + -1.5
2,334,046 - +1.0
2,334,071 - +0.0
2,334,079 + -2.8
2,334,108 + -3.6
2,334,108 + -1.8
2,334,628 + Dsui_2198 0.23 -3.2
2,334,745 + Dsui_2198 0.28 -2.7
2,334,755 + Dsui_2198 0.28 -2.2
2,334,779 + Dsui_2198 0.29 -2.0
2,334,779 + Dsui_2198 0.29 -3.0
2,334,779 + Dsui_2198 0.29 -3.1
2,334,779 + Dsui_2198 0.29 -2.6
2,334,787 - +0.0
2,334,908 + Dsui_2198 0.35 -2.3

Or see this region's nucleotide sequence