Strain Fitness in Dechlorosoma suillum PS around Dsui_1974

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1973 and Dsui_1974 overlap by 4 nucleotidesDsui_1974 and Dsui_1975 are separated by 11 nucleotides Dsui_1973: Dsui_1973 - transglutaminase-like enzyme, predicted cysteine protease, at 2,080,859 to 2,082,865 _1973 Dsui_1974: Dsui_1974 - hypothetical protein, at 2,082,862 to 2,083,836 _1974 Dsui_1975: Dsui_1975 - MoxR-like ATPase, at 2,083,848 to 2,084,789 _1975 Position (kb) 2082 2083 2084Strain fitness (log2 ratio) -2 -1 0 1 2at 2081.872 kb on - strand, within Dsui_1973at 2081.872 kb on - strand, within Dsui_1973at 2081.980 kb on - strand, within Dsui_1973at 2082.012 kb on - strand, within Dsui_1973at 2082.117 kb on - strand, within Dsui_1973at 2082.148 kb on - strand, within Dsui_1973at 2082.153 kb on + strandat 2082.328 kb on - strand, within Dsui_1973at 2082.328 kb on - strandat 2082.411 kb on - strand, within Dsui_1973at 2082.464 kb on - strandat 2082.484 kb on + strandat 2082.488 kb on - strandat 2082.492 kb on - strand, within Dsui_1973at 2082.497 kb on - strand, within Dsui_1973at 2082.606 kb on - strand, within Dsui_1973at 2082.646 kb on - strand, within Dsui_1973at 2082.704 kb on + strandat 2082.710 kb on + strandat 2082.713 kb on - strandat 2082.767 kb on - strandat 2082.875 kb on - strandat 2082.948 kb on + strandat 2082.991 kb on - strandat 2083.130 kb on - strand, within Dsui_1974at 2083.276 kb on - strand, within Dsui_1974at 2083.281 kb on + strandat 2083.413 kb on + strandat 2083.507 kb on - strand, within Dsui_1974at 2083.513 kb on - strandat 2083.521 kb on + strand, within Dsui_1974at 2083.529 kb on - strand, within Dsui_1974at 2083.557 kb on - strand, within Dsui_1974at 2083.654 kb on + strandat 2083.659 kb on + strandat 2083.662 kb on - strand, within Dsui_1974at 2083.679 kb on + strandat 2083.701 kb on + strandat 2083.709 kb on + strandat 2083.709 kb on + strandat 2083.717 kb on - strand, within Dsui_1974at 2083.717 kb on - strand, within Dsui_1974at 2083.739 kb on + strandat 2083.819 kb on - strandat 2083.854 kb on - strandat 2083.859 kb on - strandat 2083.859 kb on - strandat 2083.894 kb on - strandat 2083.962 kb on - strand, within Dsui_1975at 2083.971 kb on - strandat 2084.007 kb on - strand, within Dsui_1975at 2084.032 kb on - strand, within Dsui_1975at 2084.042 kb on + strand, within Dsui_1975at 2084.104 kb on - strand, within Dsui_1975at 2084.159 kb on + strand, within Dsui_1975at 2084.225 kb on + strand, within Dsui_1975at 2084.253 kb on + strand, within Dsui_1975at 2084.293 kb on - strand, within Dsui_1975at 2084.293 kb on - strandat 2084.300 kb on + strand, within Dsui_1975at 2084.335 kb on - strand, within Dsui_1975at 2084.407 kb on + strand, within Dsui_1975at 2084.415 kb on - strand, within Dsui_1975at 2084.475 kb on - strandat 2084.476 kb on - strand, within Dsui_1975at 2084.485 kb on - strand, within Dsui_1975at 2084.562 kb on + strand, within Dsui_1975at 2084.608 kb on - strand, within Dsui_1975at 2084.613 kb on + strand, within Dsui_1975at 2084.687 kb on - strand, within Dsui_1975at 2084.687 kb on - strand, within Dsui_1975at 2084.692 kb on - strand, within Dsui_1975at 2084.785 kb on + strandat 2084.792 kb on - strandat 2084.836 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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2,081,872 - Dsui_1973 0.50 +1.2
2,081,872 - Dsui_1973 0.50 -1.2
2,081,980 - Dsui_1973 0.56 +0.2
2,082,012 - Dsui_1973 0.57 +0.2
2,082,117 - Dsui_1973 0.63 +0.2
2,082,148 - Dsui_1973 0.64 +0.2
2,082,153 + +1.2
2,082,328 - Dsui_1973 0.73 -0.4
2,082,328 - +1.2
2,082,411 - Dsui_1973 0.77 +0.2
2,082,464 - +1.2
2,082,484 + +1.2
2,082,488 - +0.2
2,082,492 - Dsui_1973 0.81 -1.7
2,082,497 - Dsui_1973 0.82 +0.2
2,082,606 - Dsui_1973 0.87 +1.2
2,082,646 - Dsui_1973 0.89 -0.4
2,082,704 + +1.2
2,082,710 + +1.2
2,082,713 - -1.2
2,082,767 - -0.8
2,082,875 - -2.0
2,082,948 + +0.2
2,082,991 - +1.2
2,083,130 - Dsui_1974 0.27 -1.2
2,083,276 - Dsui_1974 0.42 +1.2
2,083,281 + -0.4
2,083,413 + +0.2
2,083,507 - Dsui_1974 0.66 -0.8
2,083,513 - +0.2
2,083,521 + Dsui_1974 0.68 -0.4
2,083,529 - Dsui_1974 0.68 +0.2
2,083,557 - Dsui_1974 0.71 +1.2
2,083,654 + +0.2
2,083,659 + +0.2
2,083,662 - Dsui_1974 0.82 -0.8
2,083,679 + +1.2
2,083,701 + -0.8
2,083,709 + +1.2
2,083,709 + +0.2
2,083,717 - Dsui_1974 0.88 -1.2
2,083,717 - Dsui_1974 0.88 -2.3
2,083,739 + +0.2
2,083,819 - +1.2
2,083,854 - -0.4
2,083,859 - +1.2
2,083,859 - +0.8
2,083,894 - +1.2
2,083,962 - Dsui_1975 0.12 -2.0
2,083,971 - +2.2
2,084,007 - Dsui_1975 0.17 -1.2
2,084,032 - Dsui_1975 0.20 -0.4
2,084,042 + Dsui_1975 0.21 +1.2
2,084,104 - Dsui_1975 0.27 -0.4
2,084,159 + Dsui_1975 0.33 -2.3
2,084,225 + Dsui_1975 0.40 +0.2
2,084,253 + Dsui_1975 0.43 -0.4
2,084,293 - Dsui_1975 0.47 -0.6
2,084,293 - +1.2
2,084,300 + Dsui_1975 0.48 -1.2
2,084,335 - Dsui_1975 0.52 +0.2
2,084,407 + Dsui_1975 0.59 +1.2
2,084,415 - Dsui_1975 0.60 -0.8
2,084,475 - +1.2
2,084,476 - Dsui_1975 0.67 -1.2
2,084,485 - Dsui_1975 0.68 +1.2
2,084,562 + Dsui_1975 0.76 +1.2
2,084,608 - Dsui_1975 0.81 +0.3
2,084,613 + Dsui_1975 0.81 +1.2
2,084,687 - Dsui_1975 0.89 -1.2
2,084,687 - Dsui_1975 0.89 +0.6
2,084,692 - Dsui_1975 0.90 +0.2
2,084,785 + -0.8
2,084,792 - +1.2
2,084,836 + -0.8

Or see this region's nucleotide sequence