Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1892 and Dsui_1893 are separated by 45 nucleotides Dsui_1893 and Dsui_1894 are separated by 36 nucleotides Dsui_1894 and Dsui_1895 overlap by 4 nucleotides Dsui_1895 and Dsui_1896 are separated by 72 nucleotides
Dsui_1892: Dsui_1892 - transcriptional regulator, at 1,993,079 to 1,993,966
_1892
Dsui_1893: Dsui_1893 - putative membrane protein, at 1,994,012 to 1,994,383
_1893
Dsui_1894: Dsui_1894 - E3 Ubiquitin ligase, at 1,994,420 to 1,995,325
_1894
Dsui_1895: Dsui_1895 - hypothetical protein, at 1,995,322 to 1,995,894
_1895
Dsui_1896: Dsui_1896 - arabinose efflux permease family protein, at 1,995,967 to 1,997,220
_1896
Position (kb) 1994
1995
1996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1993.492 kb on - strand at 1993.497 kb on + strand, within Dsui_1892 at 1993.497 kb on + strand, within Dsui_1892 at 1993.616 kb on + strand, within Dsui_1892 at 1993.617 kb on + strand, within Dsui_1892 at 1993.617 kb on + strand, within Dsui_1892 at 1993.697 kb on + strand, within Dsui_1892 at 1993.705 kb on - strand, within Dsui_1892 at 1993.770 kb on - strand, within Dsui_1892 at 1993.837 kb on + strand, within Dsui_1892 at 1993.879 kb on + strand at 1993.880 kb on - strand at 1993.887 kb on - strand at 1993.887 kb on - strand at 1994.055 kb on + strand, within Dsui_1893 at 1994.289 kb on - strand at 1994.325 kb on + strand, within Dsui_1893 at 1994.345 kb on - strand, within Dsui_1893 at 1994.367 kb on + strand at 1994.441 kb on + strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.444 kb on - strand at 1994.485 kb on - strand at 1994.593 kb on + strand, within Dsui_1894 at 1994.778 kb on + strand at 1994.867 kb on - strand, within Dsui_1894 at 1994.910 kb on - strand, within Dsui_1894 at 1994.993 kb on + strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.188 kb on - strand, within Dsui_1894 at 1995.333 kb on - strand at 1995.565 kb on - strand, within Dsui_1895 at 1995.565 kb on - strand, within Dsui_1895 at 1995.605 kb on - strand, within Dsui_1895 at 1995.653 kb on + strand at 1995.661 kb on - strand, within Dsui_1895 at 1995.689 kb on + strand at 1995.742 kb on - strand, within Dsui_1895 at 1995.813 kb on + strand, within Dsui_1895 at 1995.829 kb on - strand, within Dsui_1895 at 1995.934 kb on + strand at 1995.960 kb on + strand at 1995.992 kb on - strand at 1996.074 kb on + strand at 1996.082 kb on - strand at 1996.113 kb on + strand, within Dsui_1896 at 1996.155 kb on - strand, within Dsui_1896 at 1996.273 kb on - strand, within Dsui_1896 at 1996.310 kb on + strand, within Dsui_1896 at 1996.310 kb on + strand, within Dsui_1896
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,993,492 - -0.0 1,993,497 + Dsui_1892 0.47 +2.0 1,993,497 + Dsui_1892 0.47 -0.6 1,993,616 + Dsui_1892 0.60 +1.7 1,993,617 + Dsui_1892 0.61 -1.3 1,993,617 + Dsui_1892 0.61 -1.0 1,993,697 + Dsui_1892 0.70 +0.6 1,993,705 - Dsui_1892 0.70 -0.6 1,993,770 - Dsui_1892 0.78 -1.8 1,993,837 + Dsui_1892 0.85 +0.4 1,993,879 + -2.5 1,993,880 - -1.0 1,993,887 - -0.0 1,993,887 - -0.0 1,994,055 + Dsui_1893 0.12 +1.0 1,994,289 - +1.0 1,994,325 + Dsui_1893 0.84 -2.3 1,994,345 - Dsui_1893 0.90 -0.6 1,994,367 + -0.0 1,994,441 + -0.0 1,994,444 - -0.6 1,994,444 - -0.0 1,994,444 - -0.0 1,994,444 - -0.6 1,994,485 - +1.0 1,994,593 + Dsui_1894 0.19 -0.0 1,994,778 + -0.0 1,994,867 - Dsui_1894 0.49 +1.0 1,994,910 - Dsui_1894 0.54 -1.6 1,994,993 + Dsui_1894 0.63 -2.0 1,995,188 - Dsui_1894 0.85 +1.0 1,995,188 - Dsui_1894 0.85 -0.0 1,995,333 - -2.0 1,995,565 - Dsui_1895 0.42 +1.0 1,995,565 - Dsui_1895 0.42 -0.0 1,995,605 - Dsui_1895 0.49 -0.0 1,995,653 + +1.0 1,995,661 - Dsui_1895 0.59 +1.0 1,995,689 + +1.0 1,995,742 - Dsui_1895 0.73 -4.0 1,995,813 + Dsui_1895 0.86 -1.0 1,995,829 - Dsui_1895 0.88 -1.8 1,995,934 + +1.0 1,995,960 + +1.0 1,995,992 - -0.0 1,996,074 + -2.5 1,996,082 - +1.0 1,996,113 + Dsui_1896 0.12 +2.6 1,996,155 - Dsui_1896 0.15 -0.6 1,996,273 - Dsui_1896 0.24 -1.0 1,996,310 + Dsui_1896 0.27 -0.2 1,996,310 + Dsui_1896 0.27 -2.2
Or see this region's nucleotide sequence