Strain Fitness in Dechlorosoma suillum PS around Dsui_1863

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1861 and Dsui_1862 are separated by 15 nucleotidesDsui_1862 and Dsui_1863 are separated by 191 nucleotidesDsui_1863 and Dsui_1864 are separated by 41 nucleotides Dsui_1861: Dsui_1861 - HPt domain-containing protein, at 1,955,507 to 1,955,905 _1861 Dsui_1862: Dsui_1862 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,955,921 to 1,956,574 _1862 Dsui_1863: Dsui_1863 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,956,766 to 1,957,806 _1863 Dsui_1864: Dsui_1864 - hypothetical protein, at 1,957,848 to 1,959,011 _1864 Position (kb) 1956 1957 1958Strain fitness (log2 ratio) -2 -1 0 1at 1955.899 kb on + strandat 1955.985 kb on - strandat 1956.212 kb on - strand, within Dsui_1862at 1956.282 kb on + strand, within Dsui_1862at 1956.314 kb on - strand, within Dsui_1862at 1956.387 kb on - strand, within Dsui_1862at 1956.497 kb on - strand, within Dsui_1862at 1956.497 kb on - strand, within Dsui_1862at 1956.695 kb on - strandat 1956.806 kb on + strandat 1956.819 kb on - strandat 1956.880 kb on + strand, within Dsui_1863at 1956.958 kb on - strandat 1957.026 kb on + strand, within Dsui_1863at 1957.057 kb on - strandat 1957.280 kb on + strand, within Dsui_1863at 1957.280 kb on + strand, within Dsui_1863at 1957.424 kb on - strandat 1957.424 kb on - strandat 1957.476 kb on + strand, within Dsui_1863at 1957.671 kb on + strand, within Dsui_1863at 1957.671 kb on + strandat 1957.801 kb on + strandat 1957.857 kb on + strandat 1957.890 kb on + strandat 1957.903 kb on - strandat 1958.000 kb on - strand, within Dsui_1864at 1958.133 kb on + strand, within Dsui_1864at 1958.174 kb on + strand, within Dsui_1864at 1958.277 kb on + strand, within Dsui_1864at 1958.357 kb on + strandat 1958.369 kb on + strand, within Dsui_1864at 1958.412 kb on - strandat 1958.450 kb on - strandat 1958.511 kb on + strand, within Dsui_1864at 1958.519 kb on - strandat 1958.616 kb on + strand, within Dsui_1864at 1958.649 kb on + strand, within Dsui_1864at 1958.667 kb on - strandat 1958.696 kb on + strand, within Dsui_1864at 1958.704 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,955,899 + -1.1
1,955,985 - +0.1
1,956,212 - Dsui_1862 0.44 -0.3
1,956,282 + Dsui_1862 0.55 -0.1
1,956,314 - Dsui_1862 0.60 +0.3
1,956,387 - Dsui_1862 0.71 -0.0
1,956,497 - Dsui_1862 0.88 +0.2
1,956,497 - Dsui_1862 0.88 -0.4
1,956,695 - -1.1
1,956,806 + -2.1
1,956,819 - +0.9
1,956,880 + Dsui_1863 0.11 -2.7
1,956,958 - +0.9
1,957,026 + Dsui_1863 0.25 -0.4
1,957,057 - +0.9
1,957,280 + Dsui_1863 0.49 -0.1
1,957,280 + Dsui_1863 0.49 +0.9
1,957,424 - -0.1
1,957,424 - -0.1
1,957,476 + Dsui_1863 0.68 +0.9
1,957,671 + Dsui_1863 0.87 -0.4
1,957,671 + +0.9
1,957,801 + -0.1
1,957,857 + +0.9
1,957,890 + +0.9
1,957,903 - +0.9
1,958,000 - Dsui_1864 0.13 +0.9
1,958,133 + Dsui_1864 0.24 -1.6
1,958,174 + Dsui_1864 0.28 -0.6
1,958,277 + Dsui_1864 0.37 -1.6
1,958,357 + +0.9
1,958,369 + Dsui_1864 0.45 -0.6
1,958,412 - -0.1
1,958,450 - +0.9
1,958,511 + Dsui_1864 0.57 +0.9
1,958,519 - +0.9
1,958,616 + Dsui_1864 0.66 +0.9
1,958,649 + Dsui_1864 0.69 -1.1
1,958,667 - +0.9
1,958,696 + Dsui_1864 0.73 -0.6
1,958,704 - +0.9

Or see this region's nucleotide sequence