Strain Fitness in Dechlorosoma suillum PS around Dsui_1825

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1824 and Dsui_1825 are separated by 455 nucleotidesDsui_1825 and Dsui_1826 are separated by 72 nucleotidesDsui_1826 and Dsui_1827 are separated by 211 nucleotidesDsui_1827 and Dsui_1828 are separated by 24 nucleotides Dsui_1824: Dsui_1824 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,921,737 to 1,923,686 _1824 Dsui_1825: Dsui_1825 - NAD(P)H-dependent nitrite reductase, large subunit, at 1,924,142 to 1,926,580 _1825 Dsui_1826: Dsui_1826 - NAD(P)H-dependent nitrite reductase, small subunit, at 1,926,653 to 1,926,961 _1826 Dsui_1827: Dsui_1827 - hypothetical protein, at 1,927,173 to 1,927,541 _1827 Dsui_1828: Dsui_1828 - response regulator with putative antiterminator output domain, at 1,927,566 to 1,928,141 _1828 Position (kb) 1924 1925 1926 1927Strain fitness (log2 ratio) -3 -2 -1 0 1at 1923.142 kb on + strandat 1923.142 kb on + strandat 1923.160 kb on - strandat 1923.272 kb on - strandat 1923.301 kb on - strand, within Dsui_1824at 1923.375 kb on + strandat 1923.378 kb on - strand, within Dsui_1824at 1923.543 kb on - strandat 1923.756 kb on + strandat 1923.937 kb on + strandat 1923.964 kb on - strandat 1924.000 kb on - strandat 1924.073 kb on + strandat 1924.194 kb on + strandat 1924.194 kb on + strandat 1924.202 kb on - strandat 1924.217 kb on + strandat 1924.629 kb on + strand, within Dsui_1825at 1924.648 kb on + strand, within Dsui_1825at 1924.671 kb on + strand, within Dsui_1825at 1924.692 kb on + strand, within Dsui_1825at 1924.866 kb on + strandat 1924.873 kb on + strandat 1925.032 kb on + strand, within Dsui_1825at 1925.032 kb on + strandat 1925.032 kb on + strandat 1925.032 kb on + strandat 1925.073 kb on - strandat 1925.094 kb on + strand, within Dsui_1825at 1925.112 kb on - strandat 1925.241 kb on - strandat 1925.438 kb on - strand, within Dsui_1825at 1925.451 kb on - strand, within Dsui_1825at 1925.477 kb on - strand, within Dsui_1825at 1925.483 kb on - strandat 1925.505 kb on - strandat 1925.559 kb on - strandat 1925.633 kb on - strandat 1925.634 kb on - strandat 1925.675 kb on - strandat 1925.690 kb on + strandat 1925.735 kb on + strandat 1925.919 kb on + strand, within Dsui_1825at 1925.919 kb on + strandat 1925.927 kb on - strand, within Dsui_1825at 1925.982 kb on - strandat 1926.014 kb on + strandat 1926.040 kb on + strandat 1926.171 kb on + strandat 1926.195 kb on - strand, within Dsui_1825at 1926.310 kb on - strandat 1926.310 kb on - strandat 1926.367 kb on + strandat 1926.406 kb on + strandat 1926.438 kb on - strandat 1926.444 kb on + strandat 1926.477 kb on - strandat 1926.611 kb on + strandat 1926.721 kb on - strandat 1926.737 kb on + strandat 1926.845 kb on + strandat 1926.899 kb on - strand, within Dsui_1826at 1926.909 kb on - strand, within Dsui_1826at 1926.950 kb on + strandat 1926.957 kb on + strandat 1927.069 kb on + strandat 1927.086 kb on + strandat 1927.146 kb on + strandat 1927.165 kb on + strandat 1927.167 kb on - strandat 1927.257 kb on + strand, within Dsui_1827at 1927.382 kb on + strand, within Dsui_1827at 1927.427 kb on + strand, within Dsui_1827at 1927.556 kb on + strandat 1927.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,923,142 + +0.8
1,923,142 + -0.2
1,923,160 - +0.8
1,923,272 - +0.8
1,923,301 - Dsui_1824 0.80 -0.2
1,923,375 + -0.2
1,923,378 - Dsui_1824 0.84 -1.2
1,923,543 - +0.8
1,923,756 + +0.8
1,923,937 + +0.8
1,923,964 - -1.5
1,924,000 - -0.7
1,924,073 + +0.8
1,924,194 + -0.2
1,924,194 + +0.8
1,924,202 - -0.8
1,924,217 + -0.2
1,924,629 + Dsui_1825 0.20 -2.4
1,924,648 + Dsui_1825 0.21 +0.8
1,924,671 + Dsui_1825 0.22 -2.6
1,924,692 + Dsui_1825 0.23 -0.2
1,924,866 + -0.2
1,924,873 + +0.8
1,925,032 + Dsui_1825 0.36 -0.8
1,925,032 + +0.8
1,925,032 + -0.2
1,925,032 + +0.8
1,925,073 - +0.8
1,925,094 + Dsui_1825 0.39 -2.0
1,925,112 - +0.8
1,925,241 - -1.2
1,925,438 - Dsui_1825 0.53 -1.2
1,925,451 - Dsui_1825 0.54 +0.8
1,925,477 - Dsui_1825 0.55 +0.8
1,925,483 - -0.8
1,925,505 - +0.8
1,925,559 - +0.8
1,925,633 - -0.2
1,925,634 - +0.8
1,925,675 - +0.8
1,925,690 + +0.8
1,925,735 + +0.8
1,925,919 + Dsui_1825 0.73 -0.2
1,925,919 + -0.2
1,925,927 - Dsui_1825 0.73 +0.8
1,925,982 - +0.8
1,926,014 + +0.8
1,926,040 + +0.8
1,926,171 + +0.8
1,926,195 - Dsui_1825 0.84 -1.5
1,926,310 - -0.2
1,926,310 - +0.8
1,926,367 + -1.8
1,926,406 + -0.2
1,926,438 - -0.2
1,926,444 + -0.8
1,926,477 - -0.2
1,926,611 + +0.8
1,926,721 - -0.2
1,926,737 + +0.8
1,926,845 + -0.8
1,926,899 - Dsui_1826 0.80 +0.8
1,926,909 - Dsui_1826 0.83 -1.2
1,926,950 + +0.8
1,926,957 + -1.9
1,927,069 + +0.2
1,927,086 + +0.1
1,927,146 + -0.2
1,927,165 + -0.8
1,927,167 - -0.8
1,927,257 + Dsui_1827 0.23 -0.8
1,927,382 + Dsui_1827 0.57 -3.5
1,927,427 + Dsui_1827 0.69 -1.4
1,927,556 + +0.1
1,927,564 - -2.2

Or see this region's nucleotide sequence