Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1820 and Dsui_1821 are separated by 93 nucleotides Dsui_1821 and Dsui_1822 are separated by 130 nucleotides Dsui_1822 and Dsui_1823 are separated by 15 nucleotides
Dsui_1820: Dsui_1820 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,918,099 to 1,919,232
_1820
Dsui_1821: Dsui_1821 - esterase/lipase, at 1,919,326 to 1,920,243
_1821
Dsui_1822: Dsui_1822 - putative membrane protein, at 1,920,374 to 1,920,709
_1822
Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618
_1823
Position (kb)
1919
1920
1921 Strain fitness (log2 ratio)
-2
-1
0
1 at 1918.345 kb on + strand, within Dsui_1820 at 1918.435 kb on + strand at 1918.435 kb on + strand, within Dsui_1820 at 1918.593 kb on - strand at 1918.738 kb on + strand at 1918.746 kb on - strand at 1918.782 kb on - strand at 1918.795 kb on - strand, within Dsui_1820 at 1918.919 kb on + strand, within Dsui_1820 at 1918.926 kb on + strand at 1919.086 kb on - strand, within Dsui_1820 at 1919.093 kb on + strand, within Dsui_1820 at 1919.228 kb on + strand at 1919.229 kb on - strand at 1919.265 kb on + strand at 1919.265 kb on + strand at 1919.434 kb on - strand, within Dsui_1821 at 1919.564 kb on + strand at 1919.570 kb on - strand, within Dsui_1821 at 1919.655 kb on + strand, within Dsui_1821 at 1919.742 kb on + strand at 1920.053 kb on - strand at 1920.060 kb on + strand at 1920.060 kb on + strand at 1920.068 kb on - strand at 1920.078 kb on - strand, within Dsui_1821 at 1920.135 kb on - strand at 1920.141 kb on + strand at 1920.261 kb on + strand at 1920.274 kb on - strand at 1920.384 kb on + strand at 1920.420 kb on + strand, within Dsui_1822 at 1920.443 kb on + strand, within Dsui_1822 at 1920.518 kb on - strand at 1920.548 kb on + strand, within Dsui_1822 at 1920.553 kb on + strand at 1920.556 kb on - strand at 1920.651 kb on + strand, within Dsui_1822 at 1920.651 kb on + strand at 1920.659 kb on - strand at 1920.711 kb on - strand at 1920.796 kb on + strand at 1920.917 kb on - strand, within Dsui_1823 at 1920.985 kb on - strand at 1921.043 kb on + strand at 1921.066 kb on + strand at 1921.091 kb on + strand, within Dsui_1823 at 1921.160 kb on + strand, within Dsui_1823 at 1921.203 kb on + strand, within Dsui_1823
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,918,345 + Dsui_1820 0.22 -1.5 1,918,435 + +0.8 1,918,435 + Dsui_1820 0.30 +0.8 1,918,593 - +0.8 1,918,738 + +0.8 1,918,746 - +0.8 1,918,782 - +0.8 1,918,795 - Dsui_1820 0.61 -0.0 1,918,919 + Dsui_1820 0.72 -0.8 1,918,926 + +0.8 1,919,086 - Dsui_1820 0.87 +0.8 1,919,093 + Dsui_1820 0.88 -0.2 1,919,228 + +0.8 1,919,229 - +0.8 1,919,265 + +0.8 1,919,265 + +0.8 1,919,434 - Dsui_1821 0.12 -0.2 1,919,564 + +0.8 1,919,570 - Dsui_1821 0.27 -0.8 1,919,655 + Dsui_1821 0.36 -2.6 1,919,742 + -0.2 1,920,053 - +0.8 1,920,060 + -0.2 1,920,060 + -1.2 1,920,068 - -0.2 1,920,078 - Dsui_1821 0.82 -1.2 1,920,135 - +0.8 1,920,141 + +0.8 1,920,261 + -1.2 1,920,274 - +0.8 1,920,384 + -0.8 1,920,420 + Dsui_1822 0.14 +0.8 1,920,443 + Dsui_1822 0.21 -0.2 1,920,518 - +0.8 1,920,548 + Dsui_1822 0.52 +0.8 1,920,553 + -0.2 1,920,556 - +0.8 1,920,651 + Dsui_1822 0.82 -0.2 1,920,651 + +0.8 1,920,659 - +0.8 1,920,711 - +0.8 1,920,796 + -0.2 1,920,917 - Dsui_1823 0.21 -1.5 1,920,985 - +0.8 1,921,043 + +0.8 1,921,066 + +0.8 1,921,091 + Dsui_1823 0.41 -0.2 1,921,160 + Dsui_1823 0.49 -0.8 1,921,203 + Dsui_1823 0.53 -0.2
Or see this region's nucleotide sequence