Strain Fitness in Dechlorosoma suillum PS around Dsui_1821

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1820 and Dsui_1821 are separated by 93 nucleotidesDsui_1821 and Dsui_1822 are separated by 130 nucleotidesDsui_1822 and Dsui_1823 are separated by 15 nucleotides Dsui_1820: Dsui_1820 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,918,099 to 1,919,232 _1820 Dsui_1821: Dsui_1821 - esterase/lipase, at 1,919,326 to 1,920,243 _1821 Dsui_1822: Dsui_1822 - putative membrane protein, at 1,920,374 to 1,920,709 _1822 Dsui_1823: Dsui_1823 - beta-lactamase class D, at 1,920,725 to 1,921,618 _1823 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -2 -1 0 1at 1918.345 kb on + strand, within Dsui_1820at 1918.435 kb on + strandat 1918.435 kb on + strand, within Dsui_1820at 1918.593 kb on - strandat 1918.738 kb on + strandat 1918.746 kb on - strandat 1918.782 kb on - strandat 1918.795 kb on - strand, within Dsui_1820at 1918.919 kb on + strand, within Dsui_1820at 1918.926 kb on + strandat 1919.086 kb on - strand, within Dsui_1820at 1919.093 kb on + strand, within Dsui_1820at 1919.228 kb on + strandat 1919.229 kb on - strandat 1919.265 kb on + strandat 1919.265 kb on + strandat 1919.434 kb on - strand, within Dsui_1821at 1919.564 kb on + strandat 1919.570 kb on - strand, within Dsui_1821at 1919.655 kb on + strand, within Dsui_1821at 1919.742 kb on + strandat 1920.053 kb on - strandat 1920.060 kb on + strandat 1920.060 kb on + strandat 1920.068 kb on - strandat 1920.078 kb on - strand, within Dsui_1821at 1920.135 kb on - strandat 1920.141 kb on + strandat 1920.261 kb on + strandat 1920.274 kb on - strandat 1920.384 kb on + strandat 1920.420 kb on + strand, within Dsui_1822at 1920.443 kb on + strand, within Dsui_1822at 1920.518 kb on - strandat 1920.548 kb on + strand, within Dsui_1822at 1920.553 kb on + strandat 1920.556 kb on - strandat 1920.651 kb on + strand, within Dsui_1822at 1920.651 kb on + strandat 1920.659 kb on - strandat 1920.711 kb on - strandat 1920.796 kb on + strandat 1920.917 kb on - strand, within Dsui_1823at 1920.985 kb on - strandat 1921.043 kb on + strandat 1921.066 kb on + strandat 1921.091 kb on + strand, within Dsui_1823at 1921.160 kb on + strand, within Dsui_1823at 1921.203 kb on + strand, within Dsui_1823

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,918,345 + Dsui_1820 0.22 -1.5
1,918,435 + +0.8
1,918,435 + Dsui_1820 0.30 +0.8
1,918,593 - +0.8
1,918,738 + +0.8
1,918,746 - +0.8
1,918,782 - +0.8
1,918,795 - Dsui_1820 0.61 -0.0
1,918,919 + Dsui_1820 0.72 -0.8
1,918,926 + +0.8
1,919,086 - Dsui_1820 0.87 +0.8
1,919,093 + Dsui_1820 0.88 -0.2
1,919,228 + +0.8
1,919,229 - +0.8
1,919,265 + +0.8
1,919,265 + +0.8
1,919,434 - Dsui_1821 0.12 -0.2
1,919,564 + +0.8
1,919,570 - Dsui_1821 0.27 -0.8
1,919,655 + Dsui_1821 0.36 -2.6
1,919,742 + -0.2
1,920,053 - +0.8
1,920,060 + -0.2
1,920,060 + -1.2
1,920,068 - -0.2
1,920,078 - Dsui_1821 0.82 -1.2
1,920,135 - +0.8
1,920,141 + +0.8
1,920,261 + -1.2
1,920,274 - +0.8
1,920,384 + -0.8
1,920,420 + Dsui_1822 0.14 +0.8
1,920,443 + Dsui_1822 0.21 -0.2
1,920,518 - +0.8
1,920,548 + Dsui_1822 0.52 +0.8
1,920,553 + -0.2
1,920,556 - +0.8
1,920,651 + Dsui_1822 0.82 -0.2
1,920,651 + +0.8
1,920,659 - +0.8
1,920,711 - +0.8
1,920,796 + -0.2
1,920,917 - Dsui_1823 0.21 -1.5
1,920,985 - +0.8
1,921,043 + +0.8
1,921,066 + +0.8
1,921,091 + Dsui_1823 0.41 -0.2
1,921,160 + Dsui_1823 0.49 -0.8
1,921,203 + Dsui_1823 0.53 -0.2

Or see this region's nucleotide sequence