Strain Fitness in Dechlorosoma suillum PS around Dsui_1819

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1818 and Dsui_1819 are separated by 71 nucleotidesDsui_1819 and Dsui_1820 are separated by 268 nucleotides Dsui_1818: Dsui_1818 - anthranilate phosphoribosyltransferase, at 1,916,575 to 1,917,558 _1818 Dsui_1819: Dsui_1819 - 4-oxalocrotonate tautomerase family enzyme, at 1,917,630 to 1,917,830 _1819 Dsui_1820: Dsui_1820 - ABC-type branched-chain amino acid transport system, periplasmic component, at 1,918,099 to 1,919,232 _1820 Position (kb) 1917 1918Strain fitness (log2 ratio) -3 -2 -1 0 1at 1916.636 kb on + strandat 1916.732 kb on - strand, within Dsui_1818at 1916.800 kb on + strand, within Dsui_1818at 1916.914 kb on + strand, within Dsui_1818at 1917.059 kb on + strand, within Dsui_1818at 1917.059 kb on + strand, within Dsui_1818at 1917.067 kb on - strand, within Dsui_1818at 1917.094 kb on + strand, within Dsui_1818at 1917.152 kb on - strandat 1917.152 kb on - strand, within Dsui_1818at 1917.191 kb on + strand, within Dsui_1818at 1917.199 kb on - strandat 1917.386 kb on + strand, within Dsui_1818at 1917.398 kb on + strand, within Dsui_1818at 1917.418 kb on + strand, within Dsui_1818at 1917.418 kb on + strandat 1917.510 kb on + strandat 1917.518 kb on - strandat 1917.518 kb on - strandat 1917.536 kb on + strandat 1917.561 kb on - strandat 1917.617 kb on - strandat 1917.644 kb on + strandat 1917.722 kb on - strand, within Dsui_1819at 1917.807 kb on + strand, within Dsui_1819at 1917.843 kb on + strandat 1917.846 kb on - strandat 1918.010 kb on + strandat 1918.055 kb on - strandat 1918.236 kb on + strand, within Dsui_1820at 1918.245 kb on + strandat 1918.345 kb on + strand, within Dsui_1820at 1918.435 kb on + strandat 1918.435 kb on + strand, within Dsui_1820at 1918.593 kb on - strandat 1918.738 kb on + strandat 1918.746 kb on - strandat 1918.782 kb on - strandat 1918.795 kb on - strand, within Dsui_1820

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,916,636 + -0.8
1,916,732 - Dsui_1818 0.16 +0.8
1,916,800 + Dsui_1818 0.23 -2.3
1,916,914 + Dsui_1818 0.34 -0.8
1,917,059 + Dsui_1818 0.49 -2.0
1,917,059 + Dsui_1818 0.49 -3.4
1,917,067 - Dsui_1818 0.50 -0.8
1,917,094 + Dsui_1818 0.53 -1.7
1,917,152 - +0.8
1,917,152 - Dsui_1818 0.59 -0.2
1,917,191 + Dsui_1818 0.63 -1.4
1,917,199 - -0.2
1,917,386 + Dsui_1818 0.82 -3.0
1,917,398 + Dsui_1818 0.84 +0.2
1,917,418 + Dsui_1818 0.86 -1.6
1,917,418 + -0.8
1,917,510 + -0.2
1,917,518 - +0.8
1,917,518 - +0.8
1,917,536 + -1.8
1,917,561 - -1.6
1,917,617 - -2.0
1,917,644 + -1.2
1,917,722 - Dsui_1819 0.46 -1.2
1,917,807 + Dsui_1819 0.88 -2.6
1,917,843 + -1.2
1,917,846 - -0.2
1,918,010 + -2.2
1,918,055 - -0.8
1,918,236 + Dsui_1820 0.12 -0.8
1,918,245 + +0.8
1,918,345 + Dsui_1820 0.22 -1.5
1,918,435 + +0.8
1,918,435 + Dsui_1820 0.30 +0.8
1,918,593 - +0.8
1,918,738 + +0.8
1,918,746 - +0.8
1,918,782 - +0.8
1,918,795 - Dsui_1820 0.61 -0.0

Or see this region's nucleotide sequence