Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1772 and Dsui_1773 overlap by 4 nucleotides Dsui_1773 and Dsui_1774 are separated by 322 nucleotides
Dsui_1772: Dsui_1772 - type I secretion system ABC transporter, PrtD family, at 1,858,120 to 1,859,859
_1772
Dsui_1773: Dsui_1773 - type I secretion system ABC transporter, PrtD family, at 1,859,856 to 1,861,529
_1773
Dsui_1774: Dsui_1774 - hypothetical protein, at 1,861,852 to 1,866,420
_1774
Position (kb)
1859
1860
1861
1862 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1858.923 kb on + strand, within Dsui_1772 at 1859.095 kb on - strand, within Dsui_1772 at 1859.173 kb on + strand, within Dsui_1772 at 1859.288 kb on + strand, within Dsui_1772 at 1859.339 kb on + strand, within Dsui_1772 at 1859.339 kb on + strand, within Dsui_1772 at 1859.344 kb on + strand, within Dsui_1772 at 1859.352 kb on - strand, within Dsui_1772 at 1859.352 kb on - strand, within Dsui_1772 at 1859.352 kb on - strand, within Dsui_1772 at 1859.441 kb on - strand, within Dsui_1772 at 1859.536 kb on + strand, within Dsui_1772 at 1859.604 kb on + strand, within Dsui_1772 at 1859.612 kb on - strand, within Dsui_1772 at 1859.615 kb on + strand, within Dsui_1772 at 1859.615 kb on + strand, within Dsui_1772 at 1859.638 kb on + strand, within Dsui_1772 at 1859.683 kb on - strand at 1859.760 kb on + strand at 1859.843 kb on - strand at 1859.898 kb on + strand at 1859.915 kb on - strand at 1859.920 kb on + strand at 1859.988 kb on + strand at 1859.988 kb on + strand at 1859.988 kb on + strand at 1859.998 kb on - strand at 1860.038 kb on - strand, within Dsui_1773 at 1860.234 kb on - strand, within Dsui_1773 at 1860.288 kb on - strand, within Dsui_1773 at 1860.353 kb on + strand, within Dsui_1773 at 1860.371 kb on - strand, within Dsui_1773 at 1860.399 kb on + strand, within Dsui_1773 at 1860.407 kb on - strand, within Dsui_1773 at 1860.409 kb on - strand, within Dsui_1773 at 1860.409 kb on - strand, within Dsui_1773 at 1860.432 kb on + strand, within Dsui_1773 at 1860.432 kb on + strand, within Dsui_1773 at 1860.440 kb on - strand, within Dsui_1773 at 1860.463 kb on + strand, within Dsui_1773 at 1860.508 kb on - strand, within Dsui_1773 at 1860.699 kb on + strand, within Dsui_1773 at 1860.728 kb on + strand, within Dsui_1773 at 1860.736 kb on - strand, within Dsui_1773 at 1860.736 kb on - strand, within Dsui_1773 at 1860.776 kb on - strand, within Dsui_1773 at 1860.836 kb on - strand, within Dsui_1773 at 1860.846 kb on + strand, within Dsui_1773 at 1860.884 kb on + strand, within Dsui_1773 at 1860.884 kb on + strand, within Dsui_1773 at 1860.884 kb on + strand, within Dsui_1773 at 1860.886 kb on - strand, within Dsui_1773 at 1861.037 kb on + strand, within Dsui_1773 at 1861.248 kb on + strand, within Dsui_1773 at 1861.264 kb on - strand, within Dsui_1773 at 1861.359 kb on + strand, within Dsui_1773 at 1861.383 kb on + strand at 1861.391 kb on + strand at 1861.416 kb on + strand at 1861.424 kb on - strand at 1861.565 kb on - strand at 1861.565 kb on - strand at 1861.580 kb on + strand at 1861.580 kb on + strand at 1861.580 kb on - strand at 1861.602 kb on + strand at 1861.602 kb on + strand at 1861.610 kb on - strand at 1861.624 kb on + strand at 1861.663 kb on + strand at 1861.663 kb on + strand at 1861.671 kb on + strand at 1861.671 kb on + strand at 1861.671 kb on + strand at 1861.671 kb on - strand at 1861.671 kb on - strand at 1861.671 kb on - strand at 1861.712 kb on - strand at 1861.779 kb on + strand at 1861.779 kb on + strand at 1861.779 kb on + strand at 1861.781 kb on + strand at 1861.781 kb on + strand at 1861.781 kb on + strand at 1861.781 kb on + strand at 1861.787 kb on - strand at 1861.789 kb on - strand at 1861.794 kb on + strand at 1861.794 kb on + strand at 1861.802 kb on + strand at 1861.803 kb on + strand at 1861.810 kb on - strand at 1861.811 kb on + strand at 1861.816 kb on + strand at 1861.819 kb on - strand at 1861.824 kb on - strand at 1861.824 kb on - strand at 1861.824 kb on - strand at 1861.831 kb on - strand at 1861.872 kb on + strand at 1861.879 kb on + strand at 1861.885 kb on - strand at 1861.887 kb on - strand at 1861.892 kb on - strand at 1861.892 kb on - strand at 1861.893 kb on + strand at 1861.893 kb on + strand at 1861.893 kb on + strand at 1861.893 kb on + strand at 1861.893 kb on + strand at 1861.898 kb on + strand at 1861.901 kb on - strand at 1861.901 kb on - strand at 1861.901 kb on - strand at 1861.901 kb on - strand at 1861.901 kb on - strand at 1861.904 kb on - strand at 1861.923 kb on - strand at 1861.939 kb on + strand at 1861.947 kb on - strand at 1861.994 kb on + strand at 1861.994 kb on + strand at 1861.994 kb on + strand at 1861.994 kb on + strand at 1861.996 kb on - strand at 1862.002 kb on - strand at 1862.002 kb on - strand at 1862.002 kb on - strand at 1862.005 kb on - strand at 1862.011 kb on + strand at 1862.011 kb on + strand at 1862.011 kb on + strand at 1862.019 kb on - strand at 1862.031 kb on - strand at 1862.039 kb on - strand at 1862.047 kb on + strand at 1862.059 kb on - strand at 1862.061 kb on + strand at 1862.061 kb on + strand at 1862.061 kb on + strand at 1862.069 kb on - strand at 1862.076 kb on - strand at 1862.087 kb on - strand at 1862.105 kb on + strand at 1862.110 kb on + strand at 1862.110 kb on + strand at 1862.110 kb on + strand at 1862.134 kb on + strand at 1862.141 kb on + strand at 1862.141 kb on + strand at 1862.141 kb on + strand at 1862.142 kb on - strand at 1862.146 kb on + strand at 1862.154 kb on - strand at 1862.175 kb on + strand at 1862.235 kb on + strand at 1862.235 kb on + strand at 1862.243 kb on - strand at 1862.243 kb on - strand at 1862.243 kb on - strand at 1862.249 kb on + strand at 1862.254 kb on + strand at 1862.357 kb on + strand, within Dsui_1774 at 1862.386 kb on + strand, within Dsui_1774 at 1862.413 kb on - strand, within Dsui_1774 at 1862.424 kb on + strand, within Dsui_1774
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,858,923 + Dsui_1772 0.46 +0.2 1,859,095 - Dsui_1772 0.56 -1.2 1,859,173 + Dsui_1772 0.61 -0.8 1,859,288 + Dsui_1772 0.67 -1.8 1,859,339 + Dsui_1772 0.70 -2.7 1,859,339 + Dsui_1772 0.70 -0.8 1,859,344 + Dsui_1772 0.70 -0.7 1,859,352 - Dsui_1772 0.71 -2.2 1,859,352 - Dsui_1772 0.71 -2.5 1,859,352 - Dsui_1772 0.71 -0.2 1,859,441 - Dsui_1772 0.76 -1.5 1,859,536 + Dsui_1772 0.81 -0.2 1,859,604 + Dsui_1772 0.85 -0.9 1,859,612 - Dsui_1772 0.86 +0.8 1,859,615 + Dsui_1772 0.86 -0.8 1,859,615 + Dsui_1772 0.86 -0.2 1,859,638 + Dsui_1772 0.87 -0.4 1,859,683 - +0.8 1,859,760 + -2.7 1,859,843 - -2.5 1,859,898 + +0.2 1,859,915 - +0.8 1,859,920 + -2.0 1,859,988 + +0.8 1,859,988 + -1.2 1,859,988 + -1.1 1,859,998 - -0.2 1,860,038 - Dsui_1773 0.11 -0.2 1,860,234 - Dsui_1773 0.23 +0.8 1,860,288 - Dsui_1773 0.26 +0.8 1,860,353 + Dsui_1773 0.30 +2.4 1,860,371 - Dsui_1773 0.31 -3.0 1,860,399 + Dsui_1773 0.32 -0.8 1,860,407 - Dsui_1773 0.33 -0.2 1,860,409 - Dsui_1773 0.33 -0.2 1,860,409 - Dsui_1773 0.33 -0.2 1,860,432 + Dsui_1773 0.34 -2.3 1,860,432 + Dsui_1773 0.34 -1.5 1,860,440 - Dsui_1773 0.35 +0.8 1,860,463 + Dsui_1773 0.36 -1.2 1,860,508 - Dsui_1773 0.39 -0.2 1,860,699 + Dsui_1773 0.50 -2.1 1,860,728 + Dsui_1773 0.52 +0.5 1,860,736 - Dsui_1773 0.53 +0.8 1,860,736 - Dsui_1773 0.53 -0.0 1,860,776 - Dsui_1773 0.55 -1.8 1,860,836 - Dsui_1773 0.59 -2.4 1,860,846 + Dsui_1773 0.59 -1.0 1,860,884 + Dsui_1773 0.61 -2.0 1,860,884 + Dsui_1773 0.61 -1.7 1,860,884 + Dsui_1773 0.61 -1.1 1,860,886 - Dsui_1773 0.62 +0.8 1,861,037 + Dsui_1773 0.71 -0.2 1,861,248 + Dsui_1773 0.83 +1.8 1,861,264 - Dsui_1773 0.84 +0.8 1,861,359 + Dsui_1773 0.90 -2.0 1,861,383 + -0.6 1,861,391 + -1.0 1,861,416 + +0.8 1,861,424 - -0.2 1,861,565 - +0.8 1,861,565 - -0.2 1,861,580 + +0.8 1,861,580 + +0.8 1,861,580 - +0.8 1,861,602 + -2.5 1,861,602 + +0.8 1,861,610 - +0.8 1,861,624 + -1.5 1,861,663 + -0.8 1,861,663 + +0.8 1,861,671 + +0.8 1,861,671 + -0.2 1,861,671 + +0.8 1,861,671 - +0.8 1,861,671 - -1.2 1,861,671 - -0.2 1,861,712 - +0.8 1,861,779 + +0.8 1,861,779 + -0.2 1,861,779 + +0.8 1,861,781 + -1.2 1,861,781 + -1.5 1,861,781 + +0.8 1,861,781 + -0.2 1,861,787 - +0.8 1,861,789 - -1.5 1,861,794 + +0.3 1,861,794 + +0.1 1,861,802 + +0.2 1,861,803 + -0.1 1,861,810 - -0.2 1,861,811 + -0.1 1,861,816 + +0.0 1,861,819 - -0.2 1,861,824 - -0.2 1,861,824 - -0.2 1,861,824 - +0.8 1,861,831 - +0.8 1,861,872 + -1.8 1,861,879 + +0.1 1,861,885 - -0.8 1,861,887 - -0.8 1,861,892 - +0.8 1,861,892 - -0.2 1,861,893 + -0.4 1,861,893 + -0.0 1,861,893 + +0.0 1,861,893 + +0.1 1,861,893 + -0.8 1,861,898 + -0.0 1,861,901 - -1.2 1,861,901 - -0.8 1,861,901 - -0.8 1,861,901 - +0.8 1,861,901 - -0.2 1,861,904 - -0.2 1,861,923 - -2.2 1,861,939 + +0.2 1,861,947 - +0.8 1,861,994 + +0.2 1,861,994 + -0.4 1,861,994 + -0.3 1,861,994 + +0.1 1,861,996 - +0.8 1,862,002 - +0.8 1,862,002 - +0.8 1,862,002 - +0.8 1,862,005 - +0.8 1,862,011 + +0.0 1,862,011 + -0.0 1,862,011 + -0.8 1,862,019 - -0.2 1,862,031 - -0.8 1,862,039 - +0.8 1,862,047 + -0.6 1,862,059 - -1.5 1,862,061 + +0.1 1,862,061 + -0.5 1,862,061 + -1.2 1,862,069 - -0.2 1,862,076 - -0.8 1,862,087 - -0.2 1,862,105 + -0.5 1,862,110 + +0.3 1,862,110 + -0.1 1,862,110 + +0.0 1,862,134 + -0.1 1,862,141 + +0.0 1,862,141 + +0.1 1,862,141 + -0.2 1,862,142 - -2.0 1,862,146 + -0.0 1,862,154 - +0.8 1,862,175 + +0.0 1,862,235 + +0.0 1,862,235 + -0.1 1,862,243 - -0.8 1,862,243 - -1.8 1,862,243 - -1.2 1,862,249 + +0.1 1,862,254 + -0.5 1,862,357 + Dsui_1774 0.11 -0.5 1,862,386 + Dsui_1774 0.12 +0.0 1,862,413 - Dsui_1774 0.12 +0.8 1,862,424 + Dsui_1774 0.13 +0.1
Or see this region's nucleotide sequence