Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1665 and Dsui_1666 overlap by 16 nucleotides Dsui_1666 and Dsui_1667 are separated by 79 nucleotides Dsui_1667 and Dsui_1668 are separated by 249 nucleotides
Dsui_1665: Dsui_1665 - hypothetical protein, at 1,748,888 to 1,749,547
_1665
Dsui_1666: Dsui_1666 - putative iron-regulated protein, at 1,749,532 to 1,750,212
_1666
Dsui_1667: Dsui_1667 - TonB-dependent siderophore receptor, at 1,750,292 to 1,752,595
_1667
Dsui_1668: Dsui_1668 - alpha-hydroxyacid dehydrogenase, FMN-dependent L-lactate dehydrogenase, at 1,752,845 to 1,753,969
_1668
Position (kb)
1750
1751
1752
1753 Strain fitness (log2 ratio)
-2
-1
0
1 at 1749.358 kb on - strand, within Dsui_1665 at 1749.513 kb on + strand at 1749.530 kb on + strand at 1749.538 kb on - strand at 1749.538 kb on - strand at 1750.221 kb on + strand at 1750.235 kb on + strand at 1752.554 kb on - strand at 1752.901 kb on + strand at 1752.909 kb on - strand at 1752.929 kb on - strand at 1752.960 kb on - strand, within Dsui_1668 at 1752.960 kb on - strand, within Dsui_1668 at 1753.143 kb on - strand, within Dsui_1668 at 1753.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,749,358 - Dsui_1665 0.71 -0.0 1,749,513 + +0.7 1,749,530 + -0.9 1,749,538 - -0.1 1,749,538 - +0.3 1,750,221 + +0.7 1,750,235 + -0.9 1,752,554 - -2.0 1,752,901 + +0.7 1,752,909 - +0.7 1,752,929 - -1.3 1,752,960 - Dsui_1668 0.10 -0.3 1,752,960 - Dsui_1668 0.10 -1.6 1,753,143 - Dsui_1668 0.26 -1.3 1,753,309 - -0.3
Or see this region's nucleotide sequence