Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1497 and Dsui_1498 are separated by 96 nucleotides Dsui_1498 and Dsui_1499 are separated by 79 nucleotides
Dsui_1497: Dsui_1497 - YfdX protein, at 1,561,311 to 1,562,198
_1497
Dsui_1498: Dsui_1498 - hypothetical protein, at 1,562,295 to 1,562,906
_1498
Dsui_1499: Dsui_1499 - hypothetical protein, at 1,562,986 to 1,564,131
_1499
Position (kb)
1562
1563 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1561.390 kb on + strand at 1561.402 kb on + strand, within Dsui_1497 at 1561.403 kb on + strand, within Dsui_1497 at 1561.405 kb on - strand, within Dsui_1497 at 1561.410 kb on - strand, within Dsui_1497 at 1561.411 kb on - strand, within Dsui_1497 at 1561.429 kb on - strand, within Dsui_1497 at 1561.556 kb on + strand, within Dsui_1497 at 1561.562 kb on + strand, within Dsui_1497 at 1561.596 kb on - strand, within Dsui_1497 at 1561.618 kb on + strand, within Dsui_1497 at 1561.633 kb on + strand, within Dsui_1497 at 1561.656 kb on - strand, within Dsui_1497 at 1561.722 kb on - strand, within Dsui_1497 at 1561.855 kb on + strand, within Dsui_1497 at 1562.030 kb on - strand, within Dsui_1497 at 1562.053 kb on + strand, within Dsui_1497 at 1562.069 kb on - strand, within Dsui_1497 at 1562.096 kb on + strand, within Dsui_1497 at 1562.109 kb on - strand, within Dsui_1497 at 1562.173 kb on + strand at 1562.201 kb on + strand at 1562.219 kb on - strand at 1562.219 kb on - strand at 1562.219 kb on - strand at 1562.219 kb on - strand at 1562.245 kb on + strand at 1562.245 kb on + strand at 1562.247 kb on - strand at 1562.253 kb on - strand at 1562.253 kb on - strand at 1562.331 kb on - strand at 1562.336 kb on + strand at 1562.336 kb on + strand at 1562.336 kb on + strand at 1562.338 kb on + strand at 1562.384 kb on + strand, within Dsui_1498 at 1562.448 kb on + strand, within Dsui_1498 at 1562.448 kb on + strand, within Dsui_1498 at 1562.455 kb on + strand, within Dsui_1498 at 1562.455 kb on - strand, within Dsui_1498 at 1562.456 kb on - strand, within Dsui_1498 at 1562.463 kb on - strand, within Dsui_1498 at 1562.463 kb on - strand, within Dsui_1498 at 1562.488 kb on - strand, within Dsui_1498 at 1562.511 kb on - strand, within Dsui_1498 at 1562.573 kb on + strand, within Dsui_1498 at 1562.579 kb on - strand, within Dsui_1498 at 1562.618 kb on + strand, within Dsui_1498 at 1562.632 kb on + strand, within Dsui_1498 at 1562.692 kb on + strand, within Dsui_1498 at 1562.711 kb on + strand, within Dsui_1498 at 1562.723 kb on + strand, within Dsui_1498 at 1562.737 kb on + strand, within Dsui_1498 at 1562.741 kb on - strand, within Dsui_1498 at 1562.755 kb on - strand, within Dsui_1498 at 1562.828 kb on + strand, within Dsui_1498 at 1562.828 kb on - strand, within Dsui_1498 at 1562.901 kb on + strand at 1562.901 kb on + strand at 1562.901 kb on + strand at 1562.901 kb on + strand at 1562.909 kb on - strand at 1562.909 kb on - strand at 1562.909 kb on - strand at 1562.910 kb on - strand at 1563.032 kb on + strand at 1563.046 kb on + strand at 1563.071 kb on + strand at 1563.072 kb on + strand at 1563.079 kb on - strand at 1563.079 kb on - strand at 1563.122 kb on - strand, within Dsui_1499 at 1563.135 kb on + strand, within Dsui_1499 at 1563.159 kb on + strand, within Dsui_1499 at 1563.162 kb on - strand, within Dsui_1499 at 1563.167 kb on + strand, within Dsui_1499 at 1563.170 kb on + strand, within Dsui_1499 at 1563.170 kb on + strand, within Dsui_1499 at 1563.200 kb on + strand, within Dsui_1499 at 1563.200 kb on + strand, within Dsui_1499 at 1563.250 kb on - strand, within Dsui_1499 at 1563.261 kb on - strand, within Dsui_1499 at 1563.308 kb on - strand, within Dsui_1499 at 1563.341 kb on + strand, within Dsui_1499 at 1563.341 kb on + strand, within Dsui_1499 at 1563.445 kb on - strand, within Dsui_1499 at 1563.485 kb on + strand, within Dsui_1499 at 1563.493 kb on - strand, within Dsui_1499 at 1563.621 kb on - strand, within Dsui_1499 at 1563.681 kb on - strand, within Dsui_1499 at 1563.686 kb on - strand, within Dsui_1499 at 1563.799 kb on + strand, within Dsui_1499
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,561,390 + +0.6 1,561,402 + Dsui_1497 0.10 -0.8 1,561,403 + Dsui_1497 0.10 -0.8 1,561,405 - Dsui_1497 0.11 +0.7 1,561,410 - Dsui_1497 0.11 -1.3 1,561,411 - Dsui_1497 0.11 -1.3 1,561,429 - Dsui_1497 0.13 -0.3 1,561,556 + Dsui_1497 0.28 +0.6 1,561,562 + Dsui_1497 0.28 -1.8 1,561,596 - Dsui_1497 0.32 +0.7 1,561,618 + Dsui_1497 0.35 -1.4 1,561,633 + Dsui_1497 0.36 -1.0 1,561,656 - Dsui_1497 0.39 -0.8 1,561,722 - Dsui_1497 0.46 +0.7 1,561,855 + Dsui_1497 0.61 -0.5 1,562,030 - Dsui_1497 0.81 -1.6 1,562,053 + Dsui_1497 0.84 +1.7 1,562,069 - Dsui_1497 0.85 -0.3 1,562,096 + Dsui_1497 0.88 -0.7 1,562,109 - Dsui_1497 0.90 +0.7 1,562,173 + -1.3 1,562,201 + -2.6 1,562,219 - +0.8 1,562,219 - +0.8 1,562,219 - -0.8 1,562,219 - -1.2 1,562,245 + -0.8 1,562,245 + -0.7 1,562,247 - -2.7 1,562,253 - +0.8 1,562,253 - +0.8 1,562,331 - -0.2 1,562,336 + -0.9 1,562,336 + -0.3 1,562,336 + -0.3 1,562,338 + -1.0 1,562,384 + Dsui_1498 0.15 -0.2 1,562,448 + Dsui_1498 0.25 -1.1 1,562,448 + Dsui_1498 0.25 -1.3 1,562,455 + Dsui_1498 0.26 -0.3 1,562,455 - Dsui_1498 0.26 -2.1 1,562,456 - Dsui_1498 0.26 +0.8 1,562,463 - Dsui_1498 0.27 -0.2 1,562,463 - Dsui_1498 0.27 +0.8 1,562,488 - Dsui_1498 0.32 -0.8 1,562,511 - Dsui_1498 0.35 +0.8 1,562,573 + Dsui_1498 0.45 -2.0 1,562,579 - Dsui_1498 0.46 -0.2 1,562,618 + Dsui_1498 0.53 -2.3 1,562,632 + Dsui_1498 0.55 -2.2 1,562,692 + Dsui_1498 0.65 -0.3 1,562,711 + Dsui_1498 0.68 -0.9 1,562,723 + Dsui_1498 0.70 -1.4 1,562,737 + Dsui_1498 0.72 -1.1 1,562,741 - Dsui_1498 0.73 +0.8 1,562,755 - Dsui_1498 0.75 +0.8 1,562,828 + Dsui_1498 0.87 +0.4 1,562,828 - Dsui_1498 0.87 +0.8 1,562,901 + -3.5 1,562,901 + -0.6 1,562,901 + -1.0 1,562,901 + -1.0 1,562,909 - +0.8 1,562,909 - +0.2 1,562,909 - +0.8 1,562,910 - +0.8 1,563,032 + -1.5 1,563,046 + -1.1 1,563,071 + +0.3 1,563,072 + -0.5 1,563,079 - +0.8 1,563,079 - +0.8 1,563,122 - Dsui_1499 0.12 -0.2 1,563,135 + Dsui_1499 0.13 -0.9 1,563,159 + Dsui_1499 0.15 -1.7 1,563,162 - Dsui_1499 0.15 -1.6 1,563,167 + Dsui_1499 0.16 -1.1 1,563,170 + Dsui_1499 0.16 +0.2 1,563,170 + Dsui_1499 0.16 -1.3 1,563,200 + Dsui_1499 0.19 -1.6 1,563,200 + Dsui_1499 0.19 -1.8 1,563,250 - Dsui_1499 0.23 +0.2 1,563,261 - Dsui_1499 0.24 +0.8 1,563,308 - Dsui_1499 0.28 +0.8 1,563,341 + Dsui_1499 0.31 +0.2 1,563,341 + Dsui_1499 0.31 -2.3 1,563,445 - Dsui_1499 0.40 +0.8 1,563,485 + Dsui_1499 0.44 -1.2 1,563,493 - Dsui_1499 0.44 -2.8 1,563,621 - Dsui_1499 0.55 +0.8 1,563,681 - Dsui_1499 0.61 -0.2 1,563,686 - Dsui_1499 0.61 -0.6 1,563,799 + Dsui_1499 0.71 -1.0
Or see this region's nucleotide sequence