Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1482 and Dsui_1483 are separated by 42 nucleotides Dsui_1483 and Dsui_1484 are separated by 525 nucleotides Dsui_1484 and Dsui_1485 are separated by 92 nucleotides
Dsui_1482: Dsui_1482 - hypothetical protein, at 1,547,219 to 1,547,503
_1482
Dsui_1483: Dsui_1483 - putative transcription regulator containing HTH domain, at 1,547,546 to 1,548,760
_1483
Dsui_1484: Dsui_1484 - hypothetical protein, at 1,549,286 to 1,549,444
_1484
Dsui_1485: Dsui_1485 - NC domain protein, at 1,549,537 to 1,549,905
_1485
Position (kb)
1547
1548
1549 Strain fitness (log2 ratio)
-2
-1
0
1 at 1546.588 kb on - strand at 1546.645 kb on + strand at 1546.646 kb on - strand at 1546.650 kb on + strand at 1546.652 kb on + strand at 1546.655 kb on - strand at 1546.660 kb on - strand at 1546.711 kb on - strand at 1546.773 kb on + strand at 1546.776 kb on - strand at 1546.776 kb on - strand at 1546.960 kb on + strand at 1546.960 kb on + strand at 1546.999 kb on - strand at 1547.037 kb on + strand at 1547.108 kb on + strand at 1547.241 kb on + strand at 1547.445 kb on + strand, within Dsui_1482 at 1547.453 kb on - strand, within Dsui_1482 at 1547.453 kb on - strand, within Dsui_1482 at 1547.468 kb on - strand, within Dsui_1482 at 1547.507 kb on + strand at 1548.731 kb on + strand at 1548.896 kb on - strand at 1548.969 kb on - strand at 1548.971 kb on + strand at 1549.081 kb on + strand at 1549.110 kb on - strand at 1549.127 kb on + strand at 1549.160 kb on - strand at 1549.247 kb on - strand at 1549.495 kb on + strand at 1549.514 kb on - strand at 1549.519 kb on - strand at 1549.548 kb on + strand at 1549.599 kb on + strand, within Dsui_1485 at 1549.607 kb on - strand, within Dsui_1485 at 1549.757 kb on - strand, within Dsui_1485
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,546,588 - +0.7 1,546,645 + -1.6 1,546,646 - -0.5 1,546,650 + -1.3 1,546,652 + -0.3 1,546,655 - -0.3 1,546,660 - -2.7 1,546,711 - -0.9 1,546,773 + -0.9 1,546,776 - +0.7 1,546,776 - -0.1 1,546,960 + -1.3 1,546,960 + +0.7 1,546,999 - +0.7 1,547,037 + +0.7 1,547,108 + -0.3 1,547,241 + -0.0 1,547,445 + Dsui_1482 0.79 +0.4 1,547,453 - Dsui_1482 0.82 +0.7 1,547,453 - Dsui_1482 0.82 -0.9 1,547,468 - Dsui_1482 0.87 -0.3 1,547,507 + -0.3 1,548,731 + +0.2 1,548,896 - -0.2 1,548,969 - -0.2 1,548,971 + -1.1 1,549,081 + +0.1 1,549,110 - +0.7 1,549,127 + -0.6 1,549,160 - -0.9 1,549,247 - -0.9 1,549,495 + -0.6 1,549,514 - -0.9 1,549,519 - -0.3 1,549,548 + -0.4 1,549,599 + Dsui_1485 0.17 -0.6 1,549,607 - Dsui_1485 0.19 +0.7 1,549,757 - Dsui_1485 0.60 +0.7
Or see this region's nucleotide sequence