Strain Fitness in Dechlorosoma suillum PS around Dsui_1449

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1448 and Dsui_1449 are separated by 233 nucleotidesDsui_1449 and Dsui_1450 are separated by 16 nucleotidesDsui_1450 and Dsui_1451 are separated by 22 nucleotides Dsui_1448: Dsui_1448 - putative ornithine cyclodeaminase, mu-crystallin, at 1,503,277 to 1,504,248 _1448 Dsui_1449: Dsui_1449 - protein kinase family protein, at 1,504,482 to 1,506,998 _1449 Dsui_1450: Dsui_1450 - serine/threonine protein phosphatase, at 1,507,015 to 1,507,842 _1450 Dsui_1451: Dsui_1451 - FHA domain-containing protein, at 1,507,865 to 1,508,593 _1451 Position (kb) 1504 1505 1506 1507Strain fitness (log2 ratio) -2 -1 0 1at 1503.492 kb on - strand, within Dsui_1448at 1503.558 kb on - strandat 1503.761 kb on - strand, within Dsui_1448at 1503.783 kb on + strand, within Dsui_1448at 1503.847 kb on - strand, within Dsui_1448at 1503.904 kb on - strand, within Dsui_1448at 1503.910 kb on + strand, within Dsui_1448at 1504.012 kb on + strand, within Dsui_1448at 1504.187 kb on + strandat 1504.219 kb on - strandat 1504.337 kb on + strandat 1504.343 kb on - strandat 1504.343 kb on - strandat 1504.451 kb on + strandat 1504.492 kb on - strandat 1504.499 kb on + strandat 1504.618 kb on + strandat 1504.618 kb on + strandat 1504.742 kb on + strand, within Dsui_1449at 1504.772 kb on - strand, within Dsui_1449at 1504.794 kb on + strand, within Dsui_1449at 1504.916 kb on - strand, within Dsui_1449at 1505.044 kb on + strand, within Dsui_1449at 1505.125 kb on - strand, within Dsui_1449at 1505.128 kb on + strand, within Dsui_1449at 1505.160 kb on + strand, within Dsui_1449at 1505.311 kb on + strand, within Dsui_1449at 1505.610 kb on - strand, within Dsui_1449at 1505.723 kb on - strand, within Dsui_1449at 1505.727 kb on + strand, within Dsui_1449at 1505.776 kb on + strand, within Dsui_1449at 1505.952 kb on + strand, within Dsui_1449at 1506.061 kb on - strandat 1506.061 kb on - strand, within Dsui_1449at 1506.121 kb on + strand, within Dsui_1449at 1506.159 kb on - strand, within Dsui_1449at 1506.188 kb on + strand, within Dsui_1449at 1506.227 kb on + strand, within Dsui_1449at 1506.257 kb on + strand, within Dsui_1449at 1506.353 kb on + strand, within Dsui_1449at 1506.419 kb on + strand, within Dsui_1449at 1506.515 kb on + strand, within Dsui_1449at 1506.518 kb on - strand, within Dsui_1449at 1506.575 kb on - strandat 1506.583 kb on + strand, within Dsui_1449at 1506.593 kb on + strand, within Dsui_1449at 1506.696 kb on + strand, within Dsui_1449at 1506.837 kb on - strandat 1506.837 kb on - strandat 1506.837 kb on - strandat 1506.837 kb on - strandat 1506.904 kb on - strandat 1506.904 kb on - strandat 1507.025 kb on + strandat 1507.547 kb on + strand, within Dsui_1450at 1507.631 kb on + strand, within Dsui_1450at 1507.855 kb on + strandat 1507.863 kb on - strandat 1507.969 kb on - strand, within Dsui_1451

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,503,492 - Dsui_1448 0.22 -0.9
1,503,558 - +0.7
1,503,761 - Dsui_1448 0.50 -2.5
1,503,783 + Dsui_1448 0.52 +1.7
1,503,847 - Dsui_1448 0.59 -1.7
1,503,904 - Dsui_1448 0.65 -0.9
1,503,910 + Dsui_1448 0.65 -1.4
1,504,012 + Dsui_1448 0.76 -0.7
1,504,187 + -2.5
1,504,219 - -2.7
1,504,337 + -0.2
1,504,343 - -0.3
1,504,343 - -2.3
1,504,451 + -0.8
1,504,492 - -0.3
1,504,499 + -1.1
1,504,618 + +0.3
1,504,618 + +0.9
1,504,742 + Dsui_1449 0.10 -1.3
1,504,772 - Dsui_1449 0.12 -1.3
1,504,794 + Dsui_1449 0.12 -1.0
1,504,916 - Dsui_1449 0.17 -0.9
1,505,044 + Dsui_1449 0.22 -0.3
1,505,125 - Dsui_1449 0.26 -1.9
1,505,128 + Dsui_1449 0.26 -0.8
1,505,160 + Dsui_1449 0.27 -0.3
1,505,311 + Dsui_1449 0.33 -1.0
1,505,610 - Dsui_1449 0.45 -0.3
1,505,723 - Dsui_1449 0.49 -0.3
1,505,727 + Dsui_1449 0.49 -1.7
1,505,776 + Dsui_1449 0.51 -1.1
1,505,952 + Dsui_1449 0.58 -0.5
1,506,061 - -0.3
1,506,061 - Dsui_1449 0.63 +0.7
1,506,121 + Dsui_1449 0.65 -1.3
1,506,159 - Dsui_1449 0.67 -0.9
1,506,188 + Dsui_1449 0.68 -0.1
1,506,227 + Dsui_1449 0.69 -2.7
1,506,257 + Dsui_1449 0.71 +0.8
1,506,353 + Dsui_1449 0.74 -1.5
1,506,419 + Dsui_1449 0.77 -1.8
1,506,515 + Dsui_1449 0.81 -0.4
1,506,518 - Dsui_1449 0.81 -0.3
1,506,575 - +0.7
1,506,583 + Dsui_1449 0.83 -0.3
1,506,593 + Dsui_1449 0.84 +0.7
1,506,696 + Dsui_1449 0.88 -0.6
1,506,837 - -1.9
1,506,837 - +0.7
1,506,837 - +0.7
1,506,837 - +0.7
1,506,904 - -1.3
1,506,904 - -1.7
1,507,025 + -1.6
1,507,547 + Dsui_1450 0.64 -1.7
1,507,631 + Dsui_1450 0.74 -1.7
1,507,855 + -0.0
1,507,863 - +0.7
1,507,969 - Dsui_1451 0.14 +0.7

Or see this region's nucleotide sequence