Strain Fitness in Dechlorosoma suillum PS around Dsui_1385

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1383 and Dsui_1384 are separated by 45 nucleotidesDsui_1384 and Dsui_1385 are separated by 168 nucleotidesDsui_1385 and Dsui_1386 overlap by 11 nucleotides Dsui_1383: Dsui_1383 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 1,438,149 to 1,440,116 _1383 Dsui_1384: Dsui_1384 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,440,162 to 1,440,839 _1384 Dsui_1385: Dsui_1385 - hypothetical protein, at 1,441,008 to 1,442,711 _1385 Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017 _1386 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -3 -2 -1 0 1at 1440.088 kb on + strandat 1440.104 kb on + strandat 1440.112 kb on - strandat 1440.189 kb on - strandat 1440.549 kb on - strand, within Dsui_1384at 1440.580 kb on - strand, within Dsui_1384at 1440.697 kb on + strand, within Dsui_1384at 1440.697 kb on + strand, within Dsui_1384at 1440.697 kb on + strand, within Dsui_1384at 1440.705 kb on - strand, within Dsui_1384at 1440.705 kb on - strand, within Dsui_1384at 1440.813 kb on + strandat 1440.887 kb on + strandat 1440.926 kb on - strandat 1441.024 kb on + strandat 1441.106 kb on - strandat 1441.111 kb on - strandat 1441.213 kb on - strand, within Dsui_1385at 1441.286 kb on + strand, within Dsui_1385at 1441.597 kb on + strand, within Dsui_1385at 1441.638 kb on - strand, within Dsui_1385at 1441.704 kb on - strandat 1441.842 kb on + strand, within Dsui_1385at 1441.923 kb on - strand, within Dsui_1385at 1441.948 kb on + strand, within Dsui_1385at 1441.975 kb on - strand, within Dsui_1385at 1442.034 kb on - strand, within Dsui_1385at 1442.050 kb on - strand, within Dsui_1385at 1442.083 kb on - strand, within Dsui_1385at 1442.083 kb on - strand, within Dsui_1385at 1442.144 kb on - strand, within Dsui_1385at 1442.247 kb on + strand, within Dsui_1385at 1442.358 kb on - strand, within Dsui_1385at 1442.541 kb on - strandat 1442.569 kb on - strandat 1442.990 kb on - strand, within Dsui_1386at 1443.171 kb on + strand, within Dsui_1386at 1443.207 kb on + strand, within Dsui_1386at 1443.247 kb on - strand, within Dsui_1386at 1443.379 kb on + strand, within Dsui_1386at 1443.420 kb on - strand, within Dsui_1386at 1443.601 kb on - strand, within Dsui_1386at 1443.603 kb on - strandat 1443.706 kb on - strand, within Dsui_1386

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,440,088 + -0.5
1,440,104 + +0.2
1,440,112 - +0.6
1,440,189 - -0.9
1,440,549 - Dsui_1384 0.57 -1.2
1,440,580 - Dsui_1384 0.62 -0.7
1,440,697 + Dsui_1384 0.79 +0.6
1,440,697 + Dsui_1384 0.79 +0.6
1,440,697 + Dsui_1384 0.79 -2.0
1,440,705 - Dsui_1384 0.80 -0.3
1,440,705 - Dsui_1384 0.80 -0.2
1,440,813 + +0.6
1,440,887 + -1.7
1,440,926 - -0.8
1,441,024 + -0.4
1,441,106 - +0.6
1,441,111 - -1.4
1,441,213 - Dsui_1385 0.12 -1.7
1,441,286 + Dsui_1385 0.16 -0.4
1,441,597 + Dsui_1385 0.35 -0.4
1,441,638 - Dsui_1385 0.37 -0.4
1,441,704 - -1.0
1,441,842 + Dsui_1385 0.49 -1.7
1,441,923 - Dsui_1385 0.54 +0.6
1,441,948 + Dsui_1385 0.55 -0.4
1,441,975 - Dsui_1385 0.57 +0.6
1,442,034 - Dsui_1385 0.60 +0.6
1,442,050 - Dsui_1385 0.61 -1.0
1,442,083 - Dsui_1385 0.63 -1.0
1,442,083 - Dsui_1385 0.63 +0.6
1,442,144 - Dsui_1385 0.67 -0.4
1,442,247 + Dsui_1385 0.73 -1.7
1,442,358 - Dsui_1385 0.79 -1.0
1,442,541 - -3.1
1,442,569 - +0.6
1,442,990 - Dsui_1386 0.22 -0.7
1,443,171 + Dsui_1386 0.36 +0.6
1,443,207 + Dsui_1386 0.38 +0.6
1,443,247 - Dsui_1386 0.41 -0.3
1,443,379 + Dsui_1386 0.51 +0.6
1,443,420 - Dsui_1386 0.55 -0.3
1,443,601 - Dsui_1386 0.68 -0.6
1,443,603 - +0.0
1,443,706 - Dsui_1386 0.76 -0.2

Or see this region's nucleotide sequence