Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1383 and Dsui_1384 are separated by 45 nucleotides Dsui_1384 and Dsui_1385 are separated by 168 nucleotides Dsui_1385 and Dsui_1386 overlap by 11 nucleotides
Dsui_1383: Dsui_1383 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 1,438,149 to 1,440,116
_1383
Dsui_1384: Dsui_1384 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 1,440,162 to 1,440,839
_1384
Dsui_1385: Dsui_1385 - hypothetical protein, at 1,441,008 to 1,442,711
_1385
Dsui_1386: Dsui_1386 - family 3 adenylate cyclase, at 1,442,701 to 1,444,017
_1386
Position (kb)
1441
1442
1443 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1440.088 kb on + strand at 1440.104 kb on + strand at 1440.112 kb on - strand at 1440.189 kb on - strand at 1440.549 kb on - strand, within Dsui_1384 at 1440.580 kb on - strand, within Dsui_1384 at 1440.697 kb on + strand, within Dsui_1384 at 1440.697 kb on + strand, within Dsui_1384 at 1440.697 kb on + strand, within Dsui_1384 at 1440.705 kb on - strand, within Dsui_1384 at 1440.705 kb on - strand, within Dsui_1384 at 1440.813 kb on + strand at 1440.887 kb on + strand at 1440.926 kb on - strand at 1441.024 kb on + strand at 1441.106 kb on - strand at 1441.111 kb on - strand at 1441.213 kb on - strand, within Dsui_1385 at 1441.286 kb on + strand, within Dsui_1385 at 1441.597 kb on + strand, within Dsui_1385 at 1441.638 kb on - strand, within Dsui_1385 at 1441.704 kb on - strand at 1441.842 kb on + strand, within Dsui_1385 at 1441.923 kb on - strand, within Dsui_1385 at 1441.948 kb on + strand, within Dsui_1385 at 1441.975 kb on - strand, within Dsui_1385 at 1442.034 kb on - strand, within Dsui_1385 at 1442.050 kb on - strand, within Dsui_1385 at 1442.083 kb on - strand, within Dsui_1385 at 1442.083 kb on - strand, within Dsui_1385 at 1442.144 kb on - strand, within Dsui_1385 at 1442.247 kb on + strand, within Dsui_1385 at 1442.358 kb on - strand, within Dsui_1385 at 1442.541 kb on - strand at 1442.569 kb on - strand at 1442.990 kb on - strand, within Dsui_1386 at 1443.171 kb on + strand, within Dsui_1386 at 1443.207 kb on + strand, within Dsui_1386 at 1443.247 kb on - strand, within Dsui_1386 at 1443.379 kb on + strand, within Dsui_1386 at 1443.420 kb on - strand, within Dsui_1386 at 1443.601 kb on - strand, within Dsui_1386 at 1443.603 kb on - strand at 1443.706 kb on - strand, within Dsui_1386
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,440,088 + -0.5 1,440,104 + +0.2 1,440,112 - +0.6 1,440,189 - -0.9 1,440,549 - Dsui_1384 0.57 -1.2 1,440,580 - Dsui_1384 0.62 -0.7 1,440,697 + Dsui_1384 0.79 +0.6 1,440,697 + Dsui_1384 0.79 +0.6 1,440,697 + Dsui_1384 0.79 -2.0 1,440,705 - Dsui_1384 0.80 -0.3 1,440,705 - Dsui_1384 0.80 -0.2 1,440,813 + +0.6 1,440,887 + -1.7 1,440,926 - -0.8 1,441,024 + -0.4 1,441,106 - +0.6 1,441,111 - -1.4 1,441,213 - Dsui_1385 0.12 -1.7 1,441,286 + Dsui_1385 0.16 -0.4 1,441,597 + Dsui_1385 0.35 -0.4 1,441,638 - Dsui_1385 0.37 -0.4 1,441,704 - -1.0 1,441,842 + Dsui_1385 0.49 -1.7 1,441,923 - Dsui_1385 0.54 +0.6 1,441,948 + Dsui_1385 0.55 -0.4 1,441,975 - Dsui_1385 0.57 +0.6 1,442,034 - Dsui_1385 0.60 +0.6 1,442,050 - Dsui_1385 0.61 -1.0 1,442,083 - Dsui_1385 0.63 -1.0 1,442,083 - Dsui_1385 0.63 +0.6 1,442,144 - Dsui_1385 0.67 -0.4 1,442,247 + Dsui_1385 0.73 -1.7 1,442,358 - Dsui_1385 0.79 -1.0 1,442,541 - -3.1 1,442,569 - +0.6 1,442,990 - Dsui_1386 0.22 -0.7 1,443,171 + Dsui_1386 0.36 +0.6 1,443,207 + Dsui_1386 0.38 +0.6 1,443,247 - Dsui_1386 0.41 -0.3 1,443,379 + Dsui_1386 0.51 +0.6 1,443,420 - Dsui_1386 0.55 -0.3 1,443,601 - Dsui_1386 0.68 -0.6 1,443,603 - +0.0 1,443,706 - Dsui_1386 0.76 -0.2
Or see this region's nucleotide sequence