Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1373 and Dsui_1374 are separated by 218 nucleotides Dsui_1374 and Dsui_1375 are separated by 36 nucleotides Dsui_1375 and Dsui_1376 are separated by 131 nucleotides
Dsui_1373: Dsui_1373 - ATP-dependent helicase HrpA, at 1,427,026 to 1,430,988
_1373
Dsui_1374: Dsui_1374 - Protein of unknown function (DUF540), at 1,431,207 to 1,431,974
_1374
Dsui_1375: Dsui_1375 - putative nuleotide-utilizing enzyme, moeA, at 1,432,011 to 1,432,799
_1375
Dsui_1376: Dsui_1376 - phasin family protein, at 1,432,931 to 1,433,488
_1376
Position (kb)
1431
1432 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1430.221 kb on - strand, within Dsui_1373 at 1430.298 kb on - strand, within Dsui_1373 at 1430.300 kb on + strand, within Dsui_1373 at 1430.448 kb on + strand, within Dsui_1373 at 1430.526 kb on + strand, within Dsui_1373 at 1430.611 kb on + strand at 1430.631 kb on + strand at 1430.662 kb on + strand at 1430.679 kb on + strand at 1430.754 kb on + strand at 1430.808 kb on - strand at 1430.825 kb on + strand at 1430.981 kb on - strand at 1431.064 kb on + strand at 1431.072 kb on - strand at 1431.110 kb on + strand at 1431.151 kb on + strand at 1431.333 kb on - strand, within Dsui_1374 at 1431.405 kb on - strand, within Dsui_1374 at 1431.584 kb on - strand, within Dsui_1374 at 1431.623 kb on - strand, within Dsui_1374 at 1431.628 kb on - strand, within Dsui_1374 at 1431.652 kb on + strand, within Dsui_1374 at 1431.684 kb on + strand, within Dsui_1374 at 1431.725 kb on - strand, within Dsui_1374 at 1431.778 kb on - strand, within Dsui_1374 at 1431.798 kb on + strand, within Dsui_1374 at 1431.860 kb on + strand, within Dsui_1374 at 1431.955 kb on + strand at 1432.008 kb on + strand at 1432.015 kb on - strand at 1432.035 kb on + strand at 1432.148 kb on - strand at 1432.388 kb on - strand, within Dsui_1375 at 1432.424 kb on + strand, within Dsui_1375 at 1432.430 kb on - strand, within Dsui_1375 at 1432.448 kb on + strand, within Dsui_1375 at 1432.503 kb on - strand, within Dsui_1375 at 1432.517 kb on - strand, within Dsui_1375 at 1432.636 kb on + strand, within Dsui_1375 at 1432.823 kb on + strand at 1432.900 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,430,221 - Dsui_1373 0.81 -0.4 1,430,298 - Dsui_1373 0.83 -0.4 1,430,300 + Dsui_1373 0.83 +0.2 1,430,448 + Dsui_1373 0.86 -1.2 1,430,526 + Dsui_1373 0.88 -0.9 1,430,611 + -1.2 1,430,631 + -0.5 1,430,662 + -0.4 1,430,679 + -1.5 1,430,754 + -1.1 1,430,808 - -0.4 1,430,825 + -0.7 1,430,981 - +0.6 1,431,064 + -0.8 1,431,072 - -2.0 1,431,110 + -0.7 1,431,151 + -0.3 1,431,333 - Dsui_1374 0.16 -0.4 1,431,405 - Dsui_1374 0.26 +0.6 1,431,584 - Dsui_1374 0.49 -1.4 1,431,623 - Dsui_1374 0.54 -0.4 1,431,628 - Dsui_1374 0.55 +0.6 1,431,652 + Dsui_1374 0.58 -0.1 1,431,684 + Dsui_1374 0.62 -0.6 1,431,725 - Dsui_1374 0.67 -1.0 1,431,778 - Dsui_1374 0.74 +0.6 1,431,798 + Dsui_1374 0.77 -0.2 1,431,860 + Dsui_1374 0.85 -1.1 1,431,955 + -0.8 1,432,008 + -0.3 1,432,015 - +0.6 1,432,035 + -3.7 1,432,148 - -0.4 1,432,388 - Dsui_1375 0.48 -1.7 1,432,424 + Dsui_1375 0.52 +0.1 1,432,430 - Dsui_1375 0.53 -2.0 1,432,448 + Dsui_1375 0.55 -0.3 1,432,503 - Dsui_1375 0.62 -0.4 1,432,517 - Dsui_1375 0.64 -1.0 1,432,636 + Dsui_1375 0.79 -1.5 1,432,823 + -0.1 1,432,900 - -0.0
Or see this region's nucleotide sequence