Strain Fitness in Dechlorosoma suillum PS around Dsui_1244

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1243 and Dsui_1244 are separated by 13 nucleotidesDsui_1244 and Dsui_1245 are separated by 167 nucleotides Dsui_1243: Dsui_1243 - hypothetical protein, at 1,302,591 to 1,303,937 _1243 Dsui_1244: Dsui_1244 - Protein of unknown function (DUF560), at 1,303,951 to 1,305,273 _1244 Dsui_1245: Dsui_1245 - arginine/lysine/ornithine decarboxylase, at 1,305,441 to 1,307,681 _1245 Position (kb) 1303 1304 1305 1306Strain fitness (log2 ratio) -3 -2 -1 0 1at 1303.104 kb on - strand, within Dsui_1243at 1303.109 kb on - strand, within Dsui_1243at 1303.109 kb on - strand, within Dsui_1243at 1303.111 kb on + strand, within Dsui_1243at 1303.119 kb on - strand, within Dsui_1243at 1303.119 kb on - strand, within Dsui_1243at 1303.192 kb on + strandat 1303.200 kb on - strand, within Dsui_1243at 1303.230 kb on + strand, within Dsui_1243at 1303.335 kb on - strand, within Dsui_1243at 1303.376 kb on + strand, within Dsui_1243at 1303.411 kb on + strandat 1303.543 kb on - strand, within Dsui_1243at 1303.603 kb on + strand, within Dsui_1243at 1303.611 kb on - strand, within Dsui_1243at 1303.625 kb on - strand, within Dsui_1243at 1303.739 kb on + strandat 1303.914 kb on - strandat 1303.921 kb on - strandat 1303.946 kb on - strandat 1303.976 kb on - strandat 1304.018 kb on - strandat 1304.018 kb on - strandat 1304.019 kb on + strandat 1304.019 kb on - strandat 1304.025 kb on + strandat 1304.112 kb on - strand, within Dsui_1244at 1304.162 kb on - strand, within Dsui_1244at 1304.178 kb on - strand, within Dsui_1244at 1304.288 kb on - strand, within Dsui_1244at 1304.299 kb on + strand, within Dsui_1244at 1304.434 kb on + strand, within Dsui_1244at 1304.439 kb on + strand, within Dsui_1244at 1304.495 kb on + strand, within Dsui_1244at 1304.513 kb on + strand, within Dsui_1244at 1304.644 kb on + strand, within Dsui_1244at 1304.683 kb on + strand, within Dsui_1244at 1304.753 kb on - strand, within Dsui_1244at 1304.797 kb on + strand, within Dsui_1244at 1304.904 kb on + strand, within Dsui_1244at 1304.914 kb on - strand, within Dsui_1244at 1304.958 kb on + strand, within Dsui_1244at 1304.976 kb on - strand, within Dsui_1244at 1304.992 kb on - strand, within Dsui_1244at 1305.039 kb on - strand, within Dsui_1244at 1305.068 kb on - strand, within Dsui_1244at 1305.229 kb on + strandat 1305.233 kb on - strandat 1305.237 kb on - strandat 1305.247 kb on - strandat 1305.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,303,104 - Dsui_1243 0.38 -0.6
1,303,109 - Dsui_1243 0.38 +0.8
1,303,109 - Dsui_1243 0.38 -0.9
1,303,111 + Dsui_1243 0.39 -1.7
1,303,119 - Dsui_1243 0.39 +0.3
1,303,119 - Dsui_1243 0.39 -1.0
1,303,192 + +0.6
1,303,200 - Dsui_1243 0.45 -1.5
1,303,230 + Dsui_1243 0.47 -0.4
1,303,335 - Dsui_1243 0.55 -1.0
1,303,376 + Dsui_1243 0.58 -1.0
1,303,411 + +0.6
1,303,543 - Dsui_1243 0.71 -0.4
1,303,603 + Dsui_1243 0.75 +0.6
1,303,611 - Dsui_1243 0.76 -1.0
1,303,625 - Dsui_1243 0.77 -0.6
1,303,739 + +0.6
1,303,914 - -1.1
1,303,921 - -0.2
1,303,946 - -0.3
1,303,976 - -1.0
1,304,018 - -0.3
1,304,018 - -2.4
1,304,019 + -0.4
1,304,019 - -0.8
1,304,025 + -1.0
1,304,112 - Dsui_1244 0.12 -2.2
1,304,162 - Dsui_1244 0.16 -2.9
1,304,178 - Dsui_1244 0.17 -0.5
1,304,288 - Dsui_1244 0.25 -1.6
1,304,299 + Dsui_1244 0.26 +0.6
1,304,434 + Dsui_1244 0.37 -0.4
1,304,439 + Dsui_1244 0.37 +0.6
1,304,495 + Dsui_1244 0.41 -0.4
1,304,513 + Dsui_1244 0.42 -1.7
1,304,644 + Dsui_1244 0.52 +0.6
1,304,683 + Dsui_1244 0.55 -0.4
1,304,753 - Dsui_1244 0.61 -0.8
1,304,797 + Dsui_1244 0.64 +0.6
1,304,904 + Dsui_1244 0.72 +0.6
1,304,914 - Dsui_1244 0.73 -2.2
1,304,958 + Dsui_1244 0.76 -1.4
1,304,976 - Dsui_1244 0.77 -1.5
1,304,992 - Dsui_1244 0.79 -1.3
1,305,039 - Dsui_1244 0.82 -0.6
1,305,068 - Dsui_1244 0.84 -1.2
1,305,229 + -2.4
1,305,233 - +0.5
1,305,237 - -0.8
1,305,247 - -1.5
1,305,281 - -0.7

Or see this region's nucleotide sequence