Strain Fitness in Dechlorosoma suillum PS around Dsui_1146

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1145 and Dsui_1146 are separated by 312 nucleotidesDsui_1146 and Dsui_1147 are separated by 194 nucleotides Dsui_1145: Dsui_1145 - site-specific recombinase XerD, at 1,199,660 to 1,200,784 _1145 Dsui_1146: Dsui_1146 - high-affinity nickel permease, at 1,201,097 to 1,201,906 _1146 Dsui_1147: Dsui_1147 - PAS domain S-box, at 1,202,101 to 1,203,474 _1147 Position (kb) 1201 1202Strain fitness (log2 ratio) -3 -2 -1 0 1at 1200.101 kb on - strand, within Dsui_1145at 1200.101 kb on - strand, within Dsui_1145at 1200.129 kb on + strand, within Dsui_1145at 1200.247 kb on + strand, within Dsui_1145at 1200.255 kb on - strand, within Dsui_1145at 1200.255 kb on - strand, within Dsui_1145at 1200.258 kb on + strand, within Dsui_1145at 1200.275 kb on - strand, within Dsui_1145at 1200.276 kb on - strand, within Dsui_1145at 1200.276 kb on - strand, within Dsui_1145at 1200.328 kb on - strand, within Dsui_1145at 1200.341 kb on - strand, within Dsui_1145at 1200.354 kb on + strand, within Dsui_1145at 1200.354 kb on + strand, within Dsui_1145at 1200.400 kb on + strand, within Dsui_1145at 1200.403 kb on + strand, within Dsui_1145at 1200.437 kb on + strand, within Dsui_1145at 1200.479 kb on + strand, within Dsui_1145at 1200.487 kb on - strand, within Dsui_1145at 1200.490 kb on - strand, within Dsui_1145at 1200.495 kb on - strand, within Dsui_1145at 1200.524 kb on + strand, within Dsui_1145at 1200.568 kb on + strand, within Dsui_1145at 1200.568 kb on + strand, within Dsui_1145at 1200.588 kb on - strand, within Dsui_1145at 1200.635 kb on - strand, within Dsui_1145at 1200.681 kb on - strandat 1200.728 kb on + strandat 1200.732 kb on + strandat 1200.740 kb on - strandat 1200.740 kb on - strandat 1200.740 kb on - strandat 1200.742 kb on - strandat 1200.743 kb on + strandat 1200.751 kb on + strandat 1200.758 kb on + strandat 1200.780 kb on - strandat 1200.866 kb on + strandat 1200.867 kb on + strandat 1200.868 kb on - strandat 1200.874 kb on - strandat 1200.884 kb on + strandat 1201.002 kb on + strandat 1201.045 kb on + strandat 1201.095 kb on + strandat 1201.183 kb on + strand, within Dsui_1146at 1201.285 kb on - strand, within Dsui_1146at 1201.344 kb on + strand, within Dsui_1146at 1201.457 kb on - strand, within Dsui_1146at 1201.603 kb on + strand, within Dsui_1146at 1201.619 kb on - strand, within Dsui_1146at 1201.621 kb on + strand, within Dsui_1146at 1201.639 kb on + strand, within Dsui_1146at 1201.740 kb on + strand, within Dsui_1146at 1201.776 kb on + strand, within Dsui_1146at 1201.864 kb on - strandat 1201.910 kb on - strandat 1202.057 kb on + strandat 1202.226 kb on - strandat 1202.270 kb on + strand, within Dsui_1147at 1202.361 kb on + strand, within Dsui_1147at 1202.366 kb on + strand, within Dsui_1147at 1202.366 kb on + strand, within Dsui_1147at 1202.366 kb on + strand, within Dsui_1147at 1202.366 kb on + strand, within Dsui_1147at 1202.374 kb on - strand, within Dsui_1147at 1202.381 kb on + strand, within Dsui_1147at 1202.433 kb on + strand, within Dsui_1147at 1202.481 kb on + strandat 1202.656 kb on - strand, within Dsui_1147at 1202.728 kb on + strand, within Dsui_1147at 1202.728 kb on + strand, within Dsui_1147at 1202.736 kb on - strand, within Dsui_1147at 1202.796 kb on + strand, within Dsui_1147at 1202.810 kb on + strand, within Dsui_1147at 1202.904 kb on - strand, within Dsui_1147

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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1,200,101 - Dsui_1145 0.39 +1.6
1,200,101 - Dsui_1145 0.39 +0.6
1,200,129 + Dsui_1145 0.42 -1.0
1,200,247 + Dsui_1145 0.52 -1.7
1,200,255 - Dsui_1145 0.53 +0.6
1,200,255 - Dsui_1145 0.53 +0.6
1,200,258 + Dsui_1145 0.53 +0.6
1,200,275 - Dsui_1145 0.55 -0.4
1,200,276 - Dsui_1145 0.55 -1.4
1,200,276 - Dsui_1145 0.55 -1.0
1,200,328 - Dsui_1145 0.59 +0.6
1,200,341 - Dsui_1145 0.61 -2.7
1,200,354 + Dsui_1145 0.62 -1.0
1,200,354 + Dsui_1145 0.62 -1.4
1,200,400 + Dsui_1145 0.66 +0.6
1,200,403 + Dsui_1145 0.66 -0.4
1,200,437 + Dsui_1145 0.69 +0.6
1,200,479 + Dsui_1145 0.73 +0.6
1,200,487 - Dsui_1145 0.74 -0.4
1,200,490 - Dsui_1145 0.74 +0.6
1,200,495 - Dsui_1145 0.74 -3.0
1,200,524 + Dsui_1145 0.77 -2.7
1,200,568 + Dsui_1145 0.81 -1.7
1,200,568 + Dsui_1145 0.81 +0.6
1,200,588 - Dsui_1145 0.82 -1.9
1,200,635 - Dsui_1145 0.87 -0.6
1,200,681 - -1.4
1,200,728 + +0.6
1,200,732 + +0.6
1,200,740 - +0.9
1,200,740 - +0.1
1,200,740 - +0.6
1,200,742 - +0.6
1,200,743 + -1.0
1,200,751 + +0.6
1,200,758 + -1.6
1,200,780 - +1.6
1,200,866 + +0.6
1,200,867 + -0.4
1,200,868 - +0.0
1,200,874 - -2.2
1,200,884 + -0.4
1,201,002 + +0.6
1,201,045 + -1.4
1,201,095 + -2.4
1,201,183 + Dsui_1146 0.11 +0.6
1,201,285 - Dsui_1146 0.23 -0.3
1,201,344 + Dsui_1146 0.30 -2.2
1,201,457 - Dsui_1146 0.44 -0.7
1,201,603 + Dsui_1146 0.62 +0.6
1,201,619 - Dsui_1146 0.64 -1.2
1,201,621 + Dsui_1146 0.65 -3.2
1,201,639 + Dsui_1146 0.67 -1.6
1,201,740 + Dsui_1146 0.79 +0.6
1,201,776 + Dsui_1146 0.84 -2.0
1,201,864 - -0.2
1,201,910 - +0.5
1,202,057 + +0.6
1,202,226 - -1.6
1,202,270 + Dsui_1147 0.12 +0.6
1,202,361 + Dsui_1147 0.19 -1.0
1,202,366 + Dsui_1147 0.19 -1.0
1,202,366 + Dsui_1147 0.19 -1.0
1,202,366 + Dsui_1147 0.19 +0.6
1,202,366 + Dsui_1147 0.19 -0.4
1,202,374 - Dsui_1147 0.20 -0.2
1,202,381 + Dsui_1147 0.20 +0.6
1,202,433 + Dsui_1147 0.24 +0.6
1,202,481 + -0.4
1,202,656 - Dsui_1147 0.40 -0.1
1,202,728 + Dsui_1147 0.46 +0.6
1,202,728 + Dsui_1147 0.46 -1.7
1,202,736 - Dsui_1147 0.46 -2.0
1,202,796 + Dsui_1147 0.51 -1.0
1,202,810 + Dsui_1147 0.52 -1.0
1,202,904 - Dsui_1147 0.58 -0.7

Or see this region's nucleotide sequence