Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1123 and Dsui_1124 are separated by 49 nucleotides Dsui_1124 and Dsui_1125 are separated by 61 nucleotides Dsui_1125 and Dsui_1126 are separated by 608 nucleotides
Dsui_1123: Dsui_1123 - methyl-accepting chemotaxis protein, at 1,171,228 to 1,172,841
_1123
Dsui_1124: Dsui_1124 - prolipoprotein diacylglyceryl transferase, at 1,172,891 to 1,173,676
_1124
Dsui_1125: Dsui_1125 - Malonyl-CoA decarboxylase (MCD), at 1,173,738 to 1,175,066
_1125
Dsui_1126: Dsui_1126 - outer membrane receptor protein, at 1,175,675 to 1,177,576
_1126
Position (kb)
1173
1174
1175
1176 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1172.799 kb on + strand at 1172.799 kb on + strand at 1172.807 kb on - strand at 1172.863 kb on + strand at 1173.702 kb on - strand at 1173.807 kb on + strand at 1173.820 kb on + strand at 1173.859 kb on - strand at 1174.509 kb on - strand, within Dsui_1125 at 1174.510 kb on - strand, within Dsui_1125 at 1174.586 kb on + strand, within Dsui_1125 at 1174.594 kb on - strand, within Dsui_1125 at 1174.604 kb on + strand, within Dsui_1125 at 1174.621 kb on + strand, within Dsui_1125 at 1174.621 kb on + strand, within Dsui_1125 at 1174.629 kb on - strand, within Dsui_1125 at 1174.680 kb on - strand, within Dsui_1125 at 1174.867 kb on + strand, within Dsui_1125 at 1174.943 kb on + strand at 1174.951 kb on + strand at 1174.951 kb on - strand at 1174.951 kb on - strand at 1175.050 kb on - strand at 1175.050 kb on - strand at 1175.124 kb on - strand at 1175.140 kb on + strand at 1175.157 kb on + strand at 1175.182 kb on + strand at 1175.183 kb on + strand at 1175.238 kb on + strand at 1175.246 kb on - strand at 1175.274 kb on + strand at 1175.279 kb on + strand at 1175.279 kb on - strand at 1175.279 kb on - strand at 1175.281 kb on + strand at 1175.314 kb on + strand at 1175.339 kb on - strand at 1175.345 kb on + strand at 1175.353 kb on - strand at 1175.377 kb on + strand at 1175.460 kb on + strand at 1175.476 kb on - strand at 1175.480 kb on - strand at 1175.486 kb on - strand at 1175.488 kb on + strand at 1175.519 kb on - strand at 1175.596 kb on - strand at 1175.601 kb on - strand at 1175.634 kb on + strand at 1175.634 kb on + strand at 1175.644 kb on + strand at 1175.652 kb on - strand at 1175.652 kb on - strand at 1175.686 kb on + strand at 1175.821 kb on + strand at 1175.863 kb on + strand at 1175.871 kb on - strand, within Dsui_1126 at 1175.962 kb on + strand, within Dsui_1126 at 1175.969 kb on + strand, within Dsui_1126 at 1175.999 kb on + strand, within Dsui_1126 at 1176.054 kb on + strand, within Dsui_1126
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 1,172,799 + -0.4 1,172,799 + -1.3 1,172,807 - -0.4 1,172,863 + -0.6 1,173,702 - +0.6 1,173,807 + -0.2 1,173,820 + -0.1 1,173,859 - -1.0 1,174,509 - Dsui_1125 0.58 -1.0 1,174,510 - Dsui_1125 0.58 -0.4 1,174,586 + Dsui_1125 0.64 +2.6 1,174,594 - Dsui_1125 0.64 +0.6 1,174,604 + Dsui_1125 0.65 -0.2 1,174,621 + Dsui_1125 0.66 +0.0 1,174,621 + Dsui_1125 0.66 -0.7 1,174,629 - Dsui_1125 0.67 -1.7 1,174,680 - Dsui_1125 0.71 +0.6 1,174,867 + Dsui_1125 0.85 -0.3 1,174,943 + -0.4 1,174,951 + -0.8 1,174,951 - -1.0 1,174,951 - -1.0 1,175,050 - -0.4 1,175,050 - +0.6 1,175,124 - -1.7 1,175,140 + -0.6 1,175,157 + -0.9 1,175,182 + -0.1 1,175,183 + -0.4 1,175,238 + +0.6 1,175,246 - -1.7 1,175,274 + -3.0 1,175,279 + +0.3 1,175,279 - -0.4 1,175,279 - -0.4 1,175,281 + -0.4 1,175,314 + -0.4 1,175,339 - -0.4 1,175,345 + +1.6 1,175,353 - -0.4 1,175,377 + +0.6 1,175,460 + -1.2 1,175,476 - -1.7 1,175,480 - -0.4 1,175,486 - +0.6 1,175,488 + -1.7 1,175,519 - -2.0 1,175,596 - +0.6 1,175,601 - +0.6 1,175,634 + -1.0 1,175,634 + -1.4 1,175,644 + +0.6 1,175,652 - +0.6 1,175,652 - -2.0 1,175,686 + -1.4 1,175,821 + -0.4 1,175,863 + -1.9 1,175,871 - Dsui_1126 0.10 -1.0 1,175,962 + Dsui_1126 0.15 -0.5 1,175,969 + Dsui_1126 0.15 -0.8 1,175,999 + Dsui_1126 0.17 +0.6 1,176,054 + Dsui_1126 0.20 -1.0
Or see this region's nucleotide sequence