Strain Fitness in Dechlorosoma suillum PS around Dsui_1075

Experiment: ALP with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_1074 and Dsui_1075 are separated by 19 nucleotidesDsui_1075 and Dsui_1076 are separated by 66 nucleotides Dsui_1074: Dsui_1074 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,107,711 to 1,110,845 _1074 Dsui_1075: Dsui_1075 - hypothetical protein, at 1,110,865 to 1,111,266 _1075 Dsui_1076: Dsui_1076 - copper/silver-translocating P-type ATPase, at 1,111,333 to 1,113,615 _1076 Position (kb) 1110 1111 1112Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1109.866 kb on + strand, within Dsui_1074at 1109.890 kb on + strand, within Dsui_1074at 1109.934 kb on + strand, within Dsui_1074at 1109.942 kb on - strand, within Dsui_1074at 1109.942 kb on - strand, within Dsui_1074at 1109.949 kb on + strand, within Dsui_1074at 1110.009 kb on - strand, within Dsui_1074at 1110.098 kb on + strand, within Dsui_1074at 1110.106 kb on - strand, within Dsui_1074at 1110.115 kb on - strand, within Dsui_1074at 1110.154 kb on - strand, within Dsui_1074at 1110.182 kb on + strand, within Dsui_1074at 1110.258 kb on + strand, within Dsui_1074at 1110.302 kb on + strand, within Dsui_1074at 1110.302 kb on + strand, within Dsui_1074at 1110.310 kb on - strand, within Dsui_1074at 1110.315 kb on - strand, within Dsui_1074at 1110.317 kb on + strand, within Dsui_1074at 1110.319 kb on + strand, within Dsui_1074at 1110.413 kb on + strand, within Dsui_1074at 1110.413 kb on + strand, within Dsui_1074at 1110.421 kb on - strand, within Dsui_1074at 1110.421 kb on - strand, within Dsui_1074at 1110.421 kb on - strand, within Dsui_1074at 1110.422 kb on + strand, within Dsui_1074at 1110.429 kb on - strand, within Dsui_1074at 1110.430 kb on - strand, within Dsui_1074at 1110.483 kb on - strand, within Dsui_1074at 1110.524 kb on + strand, within Dsui_1074at 1110.537 kb on - strandat 1110.549 kb on - strandat 1110.557 kb on - strandat 1110.559 kb on - strandat 1110.563 kb on + strandat 1110.591 kb on - strandat 1110.717 kb on - strandat 1110.769 kb on + strandat 1110.963 kb on - strand, within Dsui_1075at 1110.970 kb on - strand, within Dsui_1075at 1110.973 kb on + strand, within Dsui_1075at 1111.024 kb on - strand, within Dsui_1075at 1111.062 kb on + strand, within Dsui_1075at 1111.070 kb on - strand, within Dsui_1075at 1111.070 kb on - strand, within Dsui_1075at 1111.106 kb on + strand, within Dsui_1075at 1111.148 kb on - strand, within Dsui_1075at 1111.239 kb on + strandat 1111.263 kb on - strandat 1111.287 kb on + strandat 1111.296 kb on + strandat 1111.296 kb on + strandat 1111.296 kb on + strandat 1111.304 kb on - strandat 1111.322 kb on - strandat 1111.333 kb on - strandat 1111.379 kb on + strandat 1111.507 kb on + strandat 1111.507 kb on + strandat 1111.507 kb on + strandat 1111.515 kb on - strandat 1111.515 kb on - strandat 1111.542 kb on + strandat 1111.599 kb on + strand, within Dsui_1076at 1111.666 kb on - strand, within Dsui_1076at 1111.682 kb on - strand, within Dsui_1076at 1111.729 kb on + strand, within Dsui_1076at 1111.749 kb on + strand, within Dsui_1076at 1111.807 kb on - strand, within Dsui_1076at 1111.817 kb on - strand, within Dsui_1076at 1111.891 kb on + strand, within Dsui_1076at 1111.894 kb on - strand, within Dsui_1076at 1111.935 kb on - strand, within Dsui_1076at 1111.945 kb on - strand, within Dsui_1076at 1111.958 kb on + strand, within Dsui_1076at 1112.025 kb on - strand, within Dsui_1076at 1112.032 kb on - strand, within Dsui_1076at 1112.042 kb on - strand, within Dsui_1076at 1112.042 kb on - strand, within Dsui_1076at 1112.095 kb on + strand, within Dsui_1076at 1112.127 kb on + strand, within Dsui_1076at 1112.129 kb on + strand, within Dsui_1076at 1112.143 kb on - strand, within Dsui_1076at 1112.171 kb on + strand, within Dsui_1076at 1112.179 kb on - strand, within Dsui_1076at 1112.255 kb on - strand, within Dsui_1076

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
remove
1,109,866 + Dsui_1074 0.69 +2.3
1,109,890 + Dsui_1074 0.70 -0.3
1,109,934 + Dsui_1074 0.71 +0.7
1,109,942 - Dsui_1074 0.71 +0.7
1,109,942 - Dsui_1074 0.71 +0.7
1,109,949 + Dsui_1074 0.71 -3.3
1,110,009 - Dsui_1074 0.73 -0.6
1,110,098 + Dsui_1074 0.76 +0.7
1,110,106 - Dsui_1074 0.76 -1.3
1,110,115 - Dsui_1074 0.77 +0.7
1,110,154 - Dsui_1074 0.78 -0.9
1,110,182 + Dsui_1074 0.79 -2.3
1,110,258 + Dsui_1074 0.81 +0.7
1,110,302 + Dsui_1074 0.83 -0.0
1,110,302 + Dsui_1074 0.83 +0.7
1,110,310 - Dsui_1074 0.83 +0.7
1,110,315 - Dsui_1074 0.83 -1.3
1,110,317 + Dsui_1074 0.83 -1.6
1,110,319 + Dsui_1074 0.83 -0.9
1,110,413 + Dsui_1074 0.86 -0.3
1,110,413 + Dsui_1074 0.86 +0.7
1,110,421 - Dsui_1074 0.86 +0.7
1,110,421 - Dsui_1074 0.86 +0.7
1,110,421 - Dsui_1074 0.86 -1.6
1,110,422 + Dsui_1074 0.86 -0.9
1,110,429 - Dsui_1074 0.87 -0.3
1,110,430 - Dsui_1074 0.87 +0.7
1,110,483 - Dsui_1074 0.88 -1.3
1,110,524 + Dsui_1074 0.90 +0.7
1,110,537 - -0.3
1,110,549 - +0.7
1,110,557 - -0.3
1,110,559 - -3.1
1,110,563 + +2.7
1,110,591 - -2.1
1,110,717 - -0.3
1,110,769 + -2.1
1,110,963 - Dsui_1075 0.24 +0.7
1,110,970 - Dsui_1075 0.26 -0.3
1,110,973 + Dsui_1075 0.27 -1.6
1,111,024 - Dsui_1075 0.40 +0.7
1,111,062 + Dsui_1075 0.49 -3.6
1,111,070 - Dsui_1075 0.51 -0.9
1,111,070 - Dsui_1075 0.51 -0.3
1,111,106 + Dsui_1075 0.60 -1.9
1,111,148 - Dsui_1075 0.70 -0.3
1,111,239 + +0.7
1,111,263 - -0.9
1,111,287 + -1.6
1,111,296 + -1.6
1,111,296 + -0.3
1,111,296 + -0.9
1,111,304 - -1.6
1,111,322 - +0.7
1,111,333 - +0.7
1,111,379 + -0.9
1,111,507 + -0.0
1,111,507 + +0.7
1,111,507 + +0.7
1,111,515 - -1.6
1,111,515 - -0.3
1,111,542 + -1.1
1,111,599 + Dsui_1076 0.12 -0.3
1,111,666 - Dsui_1076 0.15 -0.9
1,111,682 - Dsui_1076 0.15 +0.7
1,111,729 + Dsui_1076 0.17 -2.3
1,111,749 + Dsui_1076 0.18 -0.7
1,111,807 - Dsui_1076 0.21 -0.3
1,111,817 - Dsui_1076 0.21 +0.7
1,111,891 + Dsui_1076 0.24 +2.3
1,111,894 - Dsui_1076 0.25 -0.3
1,111,935 - Dsui_1076 0.26 +0.7
1,111,945 - Dsui_1076 0.27 -0.9
1,111,958 + Dsui_1076 0.27 -3.0
1,112,025 - Dsui_1076 0.30 +0.7
1,112,032 - Dsui_1076 0.31 -1.3
1,112,042 - Dsui_1076 0.31 -0.3
1,112,042 - Dsui_1076 0.31 +0.7
1,112,095 + Dsui_1076 0.33 +0.7
1,112,127 + Dsui_1076 0.35 -0.3
1,112,129 + Dsui_1076 0.35 +0.7
1,112,143 - Dsui_1076 0.35 +0.7
1,112,171 + Dsui_1076 0.37 -0.9
1,112,179 - Dsui_1076 0.37 +0.7
1,112,255 - Dsui_1076 0.40 +0.7

Or see this region's nucleotide sequence