Strain Fitness in Dechlorosoma suillum PS around Dsui_0969

Experiment: ALP with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0967 and Dsui_0968 are separated by 54 nucleotidesDsui_0968 and Dsui_0969 are separated by 9 nucleotidesDsui_0969 and Dsui_0970 are separated by 139 nucleotides Dsui_0967: Dsui_0967 - hypothetical protein, at 993,124 to 993,459 _0967 Dsui_0968: Dsui_0968 - deoxyinosine 3'endonuclease (endonuclease V), at 993,514 to 994,167 _0968 Dsui_0969: Dsui_0969 - putative AP superfamily protein, at 994,177 to 995,337 _0969 Dsui_0970: Dsui_0970 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 995,477 to 996,766 _0970 Position (kb) 994 995 996Strain fitness (log2 ratio) -2 -1 0 1at 993.364 kb on + strand, within Dsui_0967at 993.372 kb on - strand, within Dsui_0967at 993.380 kb on + strand, within Dsui_0967at 993.405 kb on - strand, within Dsui_0967at 993.695 kb on - strand, within Dsui_0968at 993.789 kb on - strand, within Dsui_0968at 994.027 kb on - strand, within Dsui_0968at 994.048 kb on + strand, within Dsui_0968at 994.138 kb on - strandat 994.143 kb on - strandat 994.143 kb on - strandat 994.143 kb on - strandat 994.160 kb on - strandat 994.175 kb on + strandat 994.175 kb on + strandat 994.175 kb on + strandat 994.175 kb on + strandat 994.183 kb on - strandat 994.225 kb on - strandat 994.305 kb on + strand, within Dsui_0969at 994.455 kb on + strand, within Dsui_0969at 994.463 kb on - strand, within Dsui_0969at 994.575 kb on + strand, within Dsui_0969at 994.617 kb on + strand, within Dsui_0969at 994.674 kb on - strand, within Dsui_0969at 994.723 kb on + strand, within Dsui_0969at 994.731 kb on - strand, within Dsui_0969at 994.793 kb on + strand, within Dsui_0969at 994.831 kb on + strand, within Dsui_0969at 994.839 kb on - strand, within Dsui_0969at 994.875 kb on - strand, within Dsui_0969at 994.979 kb on + strand, within Dsui_0969at 994.999 kb on - strand, within Dsui_0969at 995.144 kb on + strand, within Dsui_0969at 995.152 kb on - strandat 995.245 kb on + strandat 995.263 kb on - strandat 995.299 kb on - strandat 995.475 kb on + strandat 995.613 kb on + strand, within Dsui_0970at 995.645 kb on + strand, within Dsui_0970at 995.689 kb on + strand, within Dsui_0970at 996.113 kb on + strand, within Dsui_0970at 996.135 kb on + strand, within Dsui_0970at 996.144 kb on - strand, within Dsui_0970at 996.230 kb on - strandat 996.247 kb on - strand, within Dsui_0970at 996.299 kb on - strand, within Dsui_0970at 996.307 kb on - strand, within Dsui_0970at 996.312 kb on - strand, within Dsui_0970at 996.321 kb on + strand, within Dsui_0970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
remove
993,364 + Dsui_0967 0.71 -0.3
993,372 - Dsui_0967 0.74 +0.7
993,380 + Dsui_0967 0.76 -0.8
993,405 - Dsui_0967 0.84 -0.3
993,695 - Dsui_0968 0.28 -1.2
993,789 - Dsui_0968 0.42 +0.8
994,027 - Dsui_0968 0.78 -1.8
994,048 + Dsui_0968 0.82 -2.4
994,138 - +0.8
994,143 - -0.2
994,143 - +0.8
994,143 - -1.2
994,160 - -1.2
994,175 + +0.8
994,175 + -1.2
994,175 + -0.8
994,175 + +0.8
994,183 - +0.8
994,225 - -0.2
994,305 + Dsui_0969 0.11 -0.2
994,455 + Dsui_0969 0.24 +0.8
994,463 - Dsui_0969 0.25 -0.8
994,575 + Dsui_0969 0.34 -1.2
994,617 + Dsui_0969 0.38 -1.2
994,674 - Dsui_0969 0.43 -2.4
994,723 + Dsui_0969 0.47 -2.0
994,731 - Dsui_0969 0.48 -0.8
994,793 + Dsui_0969 0.53 -0.8
994,831 + Dsui_0969 0.56 -0.2
994,839 - Dsui_0969 0.57 -2.6
994,875 - Dsui_0969 0.60 -0.2
994,979 + Dsui_0969 0.69 +0.8
994,999 - Dsui_0969 0.71 -1.8
995,144 + Dsui_0969 0.83 -0.2
995,152 - +0.8
995,245 + +0.8
995,263 - -0.2
995,299 - -0.2
995,475 + +0.6
995,613 + Dsui_0970 0.11 -2.4
995,645 + Dsui_0970 0.13 +0.8
995,689 + Dsui_0970 0.16 -1.0
996,113 + Dsui_0970 0.49 -1.0
996,135 + Dsui_0970 0.51 -0.2
996,144 - Dsui_0970 0.52 +0.8
996,230 - +0.8
996,247 - Dsui_0970 0.60 -1.2
996,299 - Dsui_0970 0.64 -0.8
996,307 - Dsui_0970 0.64 +0.8
996,312 - Dsui_0970 0.65 -0.2
996,321 + Dsui_0970 0.65 -0.8

Or see this region's nucleotide sequence