Strain Fitness in Dechlorosoma suillum PS around Dsui_0895

Experiment: ALP with Cobalt chloride 0.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0894 and Dsui_0895 are separated by 83 nucleotidesDsui_0895 and Dsui_0896 are separated by 18 nucleotides Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899 _0894 Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321 _0895 Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450 _0896 Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1 2at 910.037 kb on + strandat 910.046 kb on - strand, within Dsui_0894at 910.053 kb on + strand, within Dsui_0894at 910.129 kb on + strandat 910.171 kb on + strand, within Dsui_0894at 910.179 kb on - strand, within Dsui_0894at 910.184 kb on + strand, within Dsui_0894at 910.235 kb on - strandat 910.287 kb on + strand, within Dsui_0894at 910.287 kb on + strand, within Dsui_0894at 910.357 kb on + strand, within Dsui_0894at 910.402 kb on + strand, within Dsui_0894at 910.460 kb on + strand, within Dsui_0894at 910.512 kb on + strand, within Dsui_0894at 910.592 kb on - strand, within Dsui_0894at 910.631 kb on + strand, within Dsui_0894at 910.631 kb on + strand, within Dsui_0894at 910.641 kb on + strandat 910.658 kb on - strandat 910.667 kb on + strandat 910.727 kb on - strandat 910.916 kb on - strandat 911.155 kb on - strand, within Dsui_0895at 911.155 kb on - strand, within Dsui_0895at 911.155 kb on - strand, within Dsui_0895at 911.182 kb on - strand, within Dsui_0895at 911.274 kb on - strand, within Dsui_0895at 911.278 kb on - strand, within Dsui_0895at 911.331 kb on + strandat 911.331 kb on + strandat 911.373 kb on + strandat 911.380 kb on - strandat 911.398 kb on - strandat 911.405 kb on + strandat 911.405 kb on - strandat 911.410 kb on - strandat 911.413 kb on - strandat 911.420 kb on - strandat 911.551 kb on - strandat 911.628 kb on - strandat 911.638 kb on - strandat 911.735 kb on + strand, within Dsui_0896at 911.786 kb on + strandat 911.794 kb on - strandat 911.824 kb on + strand, within Dsui_0896at 911.873 kb on + strand, within Dsui_0896at 911.948 kb on + strandat 911.951 kb on - strand, within Dsui_0896at 912.029 kb on + strand, within Dsui_0896at 912.070 kb on - strand, within Dsui_0896at 912.089 kb on - strand, within Dsui_0896at 912.199 kb on + strand, within Dsui_0896at 912.238 kb on + strand, within Dsui_0896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
remove
910,037 + +0.7
910,046 - Dsui_0894 0.67 +0.7
910,053 + Dsui_0894 0.68 +0.7
910,129 + +0.7
910,171 + Dsui_0894 0.72 -1.3
910,179 - Dsui_0894 0.73 -1.6
910,184 + Dsui_0894 0.73 -1.3
910,235 - +0.7
910,287 + Dsui_0894 0.77 -1.6
910,287 + Dsui_0894 0.77 +0.7
910,357 + Dsui_0894 0.79 -0.9
910,402 + Dsui_0894 0.81 +0.7
910,460 + Dsui_0894 0.83 -0.3
910,512 + Dsui_0894 0.85 +0.7
910,592 - Dsui_0894 0.88 -0.3
910,631 + Dsui_0894 0.90 +0.7
910,631 + Dsui_0894 0.90 -0.3
910,641 + -1.3
910,658 - +1.7
910,667 + +0.7
910,727 - -0.3
910,916 - -0.4
911,155 - Dsui_0895 0.51 -1.6
911,155 - Dsui_0895 0.51 -0.1
911,155 - Dsui_0895 0.51 -0.7
911,182 - Dsui_0895 0.59 -0.9
911,274 - Dsui_0895 0.86 -1.0
911,278 - Dsui_0895 0.87 -0.3
911,331 + +0.7
911,331 + -2.3
911,373 + -0.3
911,380 - +2.1
911,398 - +0.7
911,405 + -1.6
911,405 - +2.1
911,410 - +1.8
911,413 - +0.2
911,420 - +1.5
911,551 - +1.3
911,628 - +0.1
911,638 - -0.3
911,735 + Dsui_0896 0.13 +0.7
911,786 + -0.3
911,794 - -0.3
911,824 + Dsui_0896 0.16 -0.3
911,873 + Dsui_0896 0.17 +2.7
911,948 + +0.7
911,951 - Dsui_0896 0.20 -0.9
912,029 + Dsui_0896 0.22 +0.7
912,070 - Dsui_0896 0.23 -1.3
912,089 - Dsui_0896 0.24 -0.3
912,199 + Dsui_0896 0.28 -1.3
912,238 + Dsui_0896 0.29 +0.7

Or see this region's nucleotide sequence