Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0875 and Dsui_0876 overlap by 4 nucleotides Dsui_0876 and Dsui_0877 are separated by 4 nucleotides Dsui_0877 and Dsui_0878 are separated by 322 nucleotides Dsui_0878 and Dsui_0879 are separated by 14 nucleotides
Dsui_0875: Dsui_0875 - putative branched-chain amino acid permease (azaleucine resistance), at 888,437 to 889,180
_0875
Dsui_0876: Dsui_0876 - putative membrane protein, at 889,177 to 889,479
_0876
Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863
_0877
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 888.518 kb on + strand, within Dsui_0875 at 888.623 kb on + strand, within Dsui_0875 at 888.646 kb on - strand, within Dsui_0875 at 888.666 kb on - strand at 888.725 kb on + strand, within Dsui_0875 at 888.725 kb on + strand, within Dsui_0875 at 888.725 kb on + strand, within Dsui_0875 at 888.733 kb on - strand, within Dsui_0875 at 888.733 kb on - strand, within Dsui_0875 at 888.733 kb on - strand, within Dsui_0875 at 888.782 kb on - strand, within Dsui_0875 at 888.788 kb on - strand, within Dsui_0875 at 888.793 kb on - strand, within Dsui_0875 at 888.914 kb on - strand, within Dsui_0875 at 889.097 kb on + strand, within Dsui_0875 at 889.100 kb on - strand at 889.102 kb on + strand, within Dsui_0875 at 889.120 kb on - strand at 889.120 kb on - strand at 889.156 kb on + strand at 889.158 kb on + strand at 889.158 kb on + strand at 889.164 kb on - strand at 889.352 kb on - strand at 889.393 kb on + strand, within Dsui_0876 at 889.398 kb on - strand, within Dsui_0876 at 889.432 kb on - strand at 889.475 kb on + strand at 889.539 kb on + strand at 889.540 kb on - strand at 889.604 kb on + strand at 889.610 kb on + strand at 889.638 kb on + strand at 889.653 kb on + strand, within Dsui_0877 at 889.726 kb on + strand at 889.726 kb on + strand, within Dsui_0877 at 889.734 kb on - strand, within Dsui_0877 at 889.828 kb on + strand, within Dsui_0877 at 889.828 kb on + strand, within Dsui_0877 at 889.828 kb on + strand, within Dsui_0877 at 889.846 kb on + strand, within Dsui_0877 at 889.856 kb on + strand, within Dsui_0877 at 889.864 kb on - strand, within Dsui_0877 at 889.917 kb on + strand, within Dsui_0877 at 889.954 kb on + strand, within Dsui_0877 at 890.016 kb on - strand at 890.016 kb on - strand, within Dsui_0877 at 890.098 kb on + strand, within Dsui_0877 at 890.205 kb on + strand at 890.233 kb on + strand at 890.255 kb on + strand, within Dsui_0877 at 890.255 kb on + strand at 890.256 kb on - strand at 890.261 kb on - strand, within Dsui_0877 at 890.263 kb on + strand, within Dsui_0877 at 890.263 kb on + strand, within Dsui_0877 at 890.302 kb on + strand at 890.304 kb on - strand at 890.310 kb on - strand, within Dsui_0877 at 890.310 kb on - strand, within Dsui_0877 at 890.340 kb on + strand, within Dsui_0877 at 890.349 kb on - strand, within Dsui_0877 at 890.360 kb on + strand, within Dsui_0877 at 890.368 kb on - strand, within Dsui_0877 at 890.460 kb on - strand at 890.460 kb on - strand, within Dsui_0877 at 890.466 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand at 890.510 kb on + strand, within Dsui_0877 at 890.518 kb on - strand at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.580 kb on - strand, within Dsui_0877 at 890.643 kb on - strand, within Dsui_0877 at 890.660 kb on + strand at 890.670 kb on + strand, within Dsui_0877 at 890.739 kb on + strand at 890.746 kb on + strand at 890.754 kb on - strand at 890.754 kb on - strand at 890.754 kb on - strand at 890.763 kb on + strand at 890.858 kb on + strand at 890.858 kb on - strand at 890.903 kb on - strand at 890.954 kb on - strand at 890.985 kb on + strand at 891.001 kb on + strand at 891.002 kb on + strand at 891.008 kb on + strand at 891.008 kb on - strand at 891.009 kb on - strand at 891.054 kb on - strand at 891.067 kb on + strand at 891.099 kb on - strand at 891.119 kb on + strand at 891.144 kb on + strand at 891.144 kb on + strand at 891.162 kb on - strand at 891.184 kb on + strand at 891.223 kb on + strand at 891.223 kb on + strand at 891.228 kb on + strand at 891.233 kb on + strand at 891.233 kb on + strand at 891.241 kb on - strand at 891.244 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.255 kb on + strand, within Dsui_0878 at 891.322 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.340 kb on - strand, within Dsui_0878 at 891.377 kb on - strand at 891.388 kb on + strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.574 kb on + strand, within Dsui_0878 at 891.582 kb on - strand at 891.588 kb on - strand, within Dsui_0878 at 891.593 kb on - strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.632 kb on - strand, within Dsui_0878 at 891.632 kb on - strand at 891.632 kb on - strand, within Dsui_0878 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 888,518 + Dsui_0875 0.11 -0.1 888,623 + Dsui_0875 0.25 -0.3 888,646 - Dsui_0875 0.28 -1.6 888,666 - +0.7 888,725 + Dsui_0875 0.39 -0.5 888,725 + Dsui_0875 0.39 +0.2 888,725 + Dsui_0875 0.39 -0.6 888,733 - Dsui_0875 0.40 +0.7 888,733 - Dsui_0875 0.40 +0.7 888,733 - Dsui_0875 0.40 +0.7 888,782 - Dsui_0875 0.46 -0.3 888,788 - Dsui_0875 0.47 -0.3 888,793 - Dsui_0875 0.48 -1.9 888,914 - Dsui_0875 0.64 -0.9 889,097 + Dsui_0875 0.89 +0.7 889,100 - -0.3 889,102 + Dsui_0875 0.89 +1.7 889,120 - -2.3 889,120 - -0.3 889,156 + -0.6 889,158 + -0.2 889,158 + +0.1 889,164 - -0.9 889,352 - +0.7 889,393 + Dsui_0876 0.71 -0.3 889,398 - Dsui_0876 0.73 -0.9 889,432 - +0.7 889,475 + -2.5 889,539 + -0.9 889,540 - -0.3 889,604 + -2.5 889,610 + +0.7 889,638 + +0.7 889,653 + Dsui_0877 0.12 -3.0 889,726 + +0.7 889,726 + Dsui_0877 0.18 +0.7 889,734 - Dsui_0877 0.18 +0.7 889,828 + Dsui_0877 0.25 -0.3 889,828 + Dsui_0877 0.25 -1.6 889,828 + Dsui_0877 0.25 -0.3 889,846 + Dsui_0877 0.26 +0.7 889,856 + Dsui_0877 0.27 -0.3 889,864 - Dsui_0877 0.28 +0.7 889,917 + Dsui_0877 0.31 -3.0 889,954 + Dsui_0877 0.34 -0.3 890,016 - +0.7 890,016 - Dsui_0877 0.39 -1.3 890,098 + Dsui_0877 0.44 -0.9 890,205 + +0.7 890,233 + +0.7 890,255 + Dsui_0877 0.56 -0.3 890,255 + +0.7 890,256 - +0.7 890,261 - Dsui_0877 0.56 -0.9 890,263 + Dsui_0877 0.56 -1.3 890,263 + Dsui_0877 0.56 -0.2 890,302 + +0.7 890,304 - +0.7 890,310 - Dsui_0877 0.60 +0.7 890,310 - Dsui_0877 0.60 -2.1 890,340 + Dsui_0877 0.62 -0.9 890,349 - Dsui_0877 0.63 -0.3 890,360 + Dsui_0877 0.63 -1.3 890,368 - Dsui_0877 0.64 -0.9 890,460 - +0.7 890,460 - Dsui_0877 0.71 -0.9 890,466 + Dsui_0877 0.71 -1.9 890,510 + Dsui_0877 0.74 -0.3 890,510 + Dsui_0877 0.74 -1.3 890,510 + Dsui_0877 0.74 -2.3 890,510 + Dsui_0877 0.74 -0.9 890,510 + Dsui_0877 0.74 +0.7 890,510 + Dsui_0877 0.74 -0.9 890,510 + Dsui_0877 0.74 -0.3 890,510 + +0.7 890,510 + Dsui_0877 0.74 +0.7 890,518 - +0.7 890,518 - Dsui_0877 0.75 -0.3 890,518 - Dsui_0877 0.75 -0.3 890,518 - Dsui_0877 0.75 +0.7 890,518 - Dsui_0877 0.75 +0.7 890,580 - Dsui_0877 0.79 +0.7 890,643 - Dsui_0877 0.84 +0.7 890,660 + -0.3 890,670 + Dsui_0877 0.86 +0.7 890,739 + +0.7 890,746 + +0.7 890,754 - -0.3 890,754 - +0.7 890,754 - -0.9 890,763 + -2.3 890,858 + -0.3 890,858 - +0.7 890,903 - -0.3 890,954 - +0.7 890,985 + +0.7 891,001 + +0.7 891,002 + -0.3 891,008 + -1.3 891,008 - -0.3 891,009 - -1.3 891,054 - -0.3 891,067 + -0.9 891,099 - +0.7 891,119 + -0.9 891,144 + +0.7 891,144 + +0.7 891,162 - -0.3 891,184 + -0.3 891,223 + -0.9 891,223 + -1.9 891,228 + +0.7 891,233 + -0.9 891,233 + -1.9 891,241 - -0.3 891,244 + -0.9 891,250 + Dsui_0878 0.10 +0.7 891,250 + Dsui_0878 0.10 -0.9 891,250 + +0.7 891,250 + Dsui_0878 0.10 +0.7 891,255 + Dsui_0878 0.11 -0.9 891,322 + Dsui_0878 0.21 -0.9 891,332 + Dsui_0878 0.23 -1.3 891,332 + Dsui_0878 0.23 -0.3 891,340 - Dsui_0878 0.24 -2.1 891,377 - +0.7 891,388 + Dsui_0878 0.32 -0.3 891,396 - Dsui_0878 0.33 +0.7 891,396 - Dsui_0878 0.33 -0.9 891,574 + Dsui_0878 0.61 -1.9 891,582 - +0.7 891,588 - Dsui_0878 0.63 -2.6 891,593 - Dsui_0878 0.64 -1.3 891,624 + Dsui_0878 0.69 +0.7 891,624 + Dsui_0878 0.69 -0.9 891,624 + Dsui_0878 0.69 +0.7 891,624 + Dsui_0878 0.69 -1.6 891,628 + Dsui_0878 0.69 -2.1 891,628 + Dsui_0878 0.69 -2.6 891,632 - Dsui_0878 0.70 -0.3 891,632 - +0.7 891,632 - Dsui_0878 0.70 +0.7 891,653 + Dsui_0878 0.73 -0.3 891,661 + Dsui_0878 0.75 -3.6 891,662 - Dsui_0878 0.75 -1.3 891,769 + -0.3 891,787 - -0.3 891,803 + -0.9 891,806 - +0.7 891,815 + +0.7 891,816 + -0.3 891,818 - +0.7 891,847 + +0.7
Or see this region's nucleotide sequence