Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0792 and Dsui_0793 are separated by 22 nucleotides Dsui_0793 and Dsui_0794 are separated by 49 nucleotides
Dsui_0792: Dsui_0792 - hypothetical protein, at 799,492 to 799,980
_0792
Dsui_0793: Dsui_0793 - N-acetylmuramoyl-L-alanine amidase, at 800,003 to 800,746
_0793
Dsui_0794: Dsui_0794 - putative protease with the C-terminal PDZ domain, at 800,796 to 802,634
_0794
Position (kb)
800
801 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 799.020 kb on + strand at 799.031 kb on - strand at 799.031 kb on - strand at 799.033 kb on - strand at 799.044 kb on - strand at 799.047 kb on - strand at 799.051 kb on + strand at 799.051 kb on + strand at 799.051 kb on + strand at 799.054 kb on - strand at 799.057 kb on + strand at 799.059 kb on - strand at 799.065 kb on - strand at 799.065 kb on - strand at 799.069 kb on + strand at 799.077 kb on + strand at 799.085 kb on - strand at 799.095 kb on - strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on - strand at 799.104 kb on - strand at 799.109 kb on - strand at 799.109 kb on - strand at 799.111 kb on - strand at 799.114 kb on - strand at 799.121 kb on + strand at 799.129 kb on - strand at 799.139 kb on - strand at 799.141 kb on + strand at 799.306 kb on + strand at 799.311 kb on + strand at 799.561 kb on - strand, within Dsui_0792 at 799.567 kb on - strand, within Dsui_0792 at 799.655 kb on - strand, within Dsui_0792 at 799.760 kb on - strand, within Dsui_0792 at 799.760 kb on - strand, within Dsui_0792 at 799.790 kb on - strand, within Dsui_0792 at 799.791 kb on - strand, within Dsui_0792 at 799.854 kb on - strand, within Dsui_0792 at 799.894 kb on + strand, within Dsui_0792 at 799.895 kb on - strand, within Dsui_0792 at 799.989 kb on + strand at 800.051 kb on - strand at 800.170 kb on + strand, within Dsui_0793 at 800.245 kb on - strand, within Dsui_0793 at 800.245 kb on - strand, within Dsui_0793 at 800.309 kb on + strand, within Dsui_0793 at 800.357 kb on - strand, within Dsui_0793 at 800.394 kb on + strand, within Dsui_0793 at 800.399 kb on + strand, within Dsui_0793 at 800.407 kb on - strand, within Dsui_0793 at 800.412 kb on - strand, within Dsui_0793 at 800.449 kb on - strand, within Dsui_0793 at 800.499 kb on + strand, within Dsui_0793 at 800.555 kb on + strand, within Dsui_0793 at 800.556 kb on - strand, within Dsui_0793 at 800.562 kb on - strand, within Dsui_0793 at 800.591 kb on - strand, within Dsui_0793 at 800.601 kb on - strand, within Dsui_0793 at 800.783 kb on - strand at 800.783 kb on - strand at 800.873 kb on + strand at 800.880 kb on + strand at 800.890 kb on + strand at 800.899 kb on + strand at 800.919 kb on + strand at 800.920 kb on + strand at 800.928 kb on - strand at 800.930 kb on + strand at 800.943 kb on + strand at 800.951 kb on - strand at 800.951 kb on - strand at 800.993 kb on + strand, within Dsui_0794 at 801.027 kb on - strand, within Dsui_0794 at 801.046 kb on - strand, within Dsui_0794 at 801.103 kb on - strand, within Dsui_0794 at 801.103 kb on - strand, within Dsui_0794 at 801.129 kb on + strand, within Dsui_0794 at 801.193 kb on - strand, within Dsui_0794 at 801.225 kb on + strand, within Dsui_0794 at 801.244 kb on - strand at 801.244 kb on - strand, within Dsui_0794 at 801.323 kb on - strand, within Dsui_0794 at 801.325 kb on - strand, within Dsui_0794 at 801.445 kb on + strand, within Dsui_0794 at 801.456 kb on + strand, within Dsui_0794 at 801.458 kb on + strand, within Dsui_0794 at 801.458 kb on - strand at 801.458 kb on - strand, within Dsui_0794 at 801.580 kb on + strand at 801.603 kb on + strand, within Dsui_0794 at 801.603 kb on + strand, within Dsui_0794 at 801.611 kb on - strand, within Dsui_0794 at 801.613 kb on + strand, within Dsui_0794 at 801.616 kb on - strand, within Dsui_0794
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 799,020 + -0.3 799,031 - -2.3 799,031 - -0.3 799,033 - +0.7 799,044 - +0.7 799,047 - -0.3 799,051 + -1.7 799,051 + +0.7 799,051 + -0.3 799,054 - -0.3 799,057 + -1.9 799,059 - +0.7 799,065 - -1.3 799,065 - +0.7 799,069 + +0.7 799,077 + -0.9 799,085 - -1.9 799,095 - +0.7 799,096 + +0.7 799,096 + +0.7 799,096 + -0.9 799,096 + -0.3 799,096 + -0.9 799,096 + -0.3 799,096 + +0.7 799,096 - +0.7 799,104 - -2.5 799,109 - +0.7 799,109 - -1.7 799,111 - -1.7 799,114 - -0.3 799,121 + -0.3 799,129 - -0.3 799,139 - +0.7 799,141 + +0.7 799,306 + +0.7 799,311 + -0.3 799,561 - Dsui_0792 0.14 -0.3 799,567 - Dsui_0792 0.15 -1.3 799,655 - Dsui_0792 0.33 -0.3 799,760 - Dsui_0792 0.55 -0.3 799,760 - Dsui_0792 0.55 -0.5 799,790 - Dsui_0792 0.61 -1.7 799,791 - Dsui_0792 0.61 -0.3 799,854 - Dsui_0792 0.74 -1.3 799,894 + Dsui_0792 0.82 -1.9 799,895 - Dsui_0792 0.82 -3.2 799,989 + +0.7 800,051 - -0.4 800,170 + Dsui_0793 0.22 +0.7 800,245 - Dsui_0793 0.33 -1.6 800,245 - Dsui_0793 0.33 -0.5 800,309 + Dsui_0793 0.41 -0.3 800,357 - Dsui_0793 0.48 -2.1 800,394 + Dsui_0793 0.53 -0.3 800,399 + Dsui_0793 0.53 -0.3 800,407 - Dsui_0793 0.54 -1.2 800,412 - Dsui_0793 0.55 -0.0 800,449 - Dsui_0793 0.60 -1.3 800,499 + Dsui_0793 0.67 +0.7 800,555 + Dsui_0793 0.74 +0.7 800,556 - Dsui_0793 0.74 -2.5 800,562 - Dsui_0793 0.75 -0.9 800,591 - Dsui_0793 0.79 -0.9 800,601 - Dsui_0793 0.80 -0.5 800,783 - -1.3 800,783 - -3.0 800,873 + -0.8 800,880 + -0.3 800,890 + -0.5 800,899 + -1.3 800,919 + -2.6 800,920 + -0.6 800,928 - -0.3 800,930 + -0.8 800,943 + -0.2 800,951 - +0.7 800,951 - -1.6 800,993 + Dsui_0794 0.11 +1.3 801,027 - Dsui_0794 0.13 +0.7 801,046 - Dsui_0794 0.14 -0.3 801,103 - Dsui_0794 0.17 +0.7 801,103 - Dsui_0794 0.17 -0.9 801,129 + Dsui_0794 0.18 -0.6 801,193 - Dsui_0794 0.22 -2.3 801,225 + Dsui_0794 0.23 -0.6 801,244 - +0.7 801,244 - Dsui_0794 0.24 +0.7 801,323 - Dsui_0794 0.29 -3.3 801,325 - Dsui_0794 0.29 -0.3 801,445 + Dsui_0794 0.35 -0.3 801,456 + Dsui_0794 0.36 -0.3 801,458 + Dsui_0794 0.36 -2.1 801,458 - +0.7 801,458 - Dsui_0794 0.36 -0.3 801,580 + -0.3 801,603 + Dsui_0794 0.44 -0.9 801,603 + Dsui_0794 0.44 -2.3 801,611 - Dsui_0794 0.44 -0.9 801,613 + Dsui_0794 0.44 -0.9 801,616 - Dsui_0794 0.45 +0.7
Or see this region's nucleotide sequence