Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0619 and Dsui_0620 are separated by 96 nucleotides Dsui_0620 and Dsui_0621 are separated by 2 nucleotides Dsui_0621 and Dsui_0622 are separated by 185 nucleotides
Dsui_0619: Dsui_0619 - TonB-dependent siderophore receptor, at 613,327 to 615,690
_0619
Dsui_0620: Dsui_0620 - Fe2+-dicitrate sensor, membrane component, at 615,787 to 616,710
_0620
Dsui_0621: Dsui_0621 - RNA polymerase sigma factor, sigma-70 family, at 616,713 to 617,210
_0621
Dsui_0622: Dsui_0622 - NosL, at 617,396 to 618,001
_0622
Position (kb) 615
616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 615.051 kb on - strand, within Dsui_0619 at 615.073 kb on + strand, within Dsui_0619 at 615.125 kb on - strand, within Dsui_0619 at 615.176 kb on - strand at 615.194 kb on - strand, within Dsui_0619 at 615.418 kb on + strand, within Dsui_0619 at 615.501 kb on - strand at 615.509 kb on - strand at 615.600 kb on - strand at 615.623 kb on + strand at 615.623 kb on + strand at 615.696 kb on + strand at 615.708 kb on + strand at 615.813 kb on + strand at 615.823 kb on + strand at 615.973 kb on - strand, within Dsui_0620 at 615.983 kb on - strand, within Dsui_0620 at 615.988 kb on + strand at 615.990 kb on - strand at 616.067 kb on + strand, within Dsui_0620 at 616.072 kb on + strand, within Dsui_0620 at 616.080 kb on - strand, within Dsui_0620 at 616.137 kb on - strand, within Dsui_0620 at 616.179 kb on - strand, within Dsui_0620 at 616.226 kb on - strand, within Dsui_0620 at 616.231 kb on + strand, within Dsui_0620 at 616.290 kb on + strand, within Dsui_0620 at 616.533 kb on + strand, within Dsui_0620 at 616.681 kb on + strand at 616.825 kb on - strand at 617.055 kb on + strand, within Dsui_0621 at 617.108 kb on + strand, within Dsui_0621 at 617.149 kb on - strand, within Dsui_0621 at 617.177 kb on + strand at 617.185 kb on - strand at 617.187 kb on + strand at 617.430 kb on - strand at 617.518 kb on + strand, within Dsui_0622 at 617.550 kb on - strand, within Dsui_0622 at 617.621 kb on + strand, within Dsui_0622 at 617.634 kb on - strand, within Dsui_0622 at 617.639 kb on - strand, within Dsui_0622 at 617.687 kb on - strand, within Dsui_0622
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 615,051 - Dsui_0619 0.73 +0.6 615,073 + Dsui_0619 0.74 -1.0 615,125 - Dsui_0619 0.76 +0.6 615,176 - +0.6 615,194 - Dsui_0619 0.79 -0.4 615,418 + Dsui_0619 0.88 -0.4 615,501 - -0.4 615,509 - -0.4 615,600 - -0.0 615,623 + +0.6 615,623 + -1.4 615,696 + -1.0 615,708 + -0.4 615,813 + +0.6 615,823 + -1.0 615,973 - Dsui_0620 0.20 -2.0 615,983 - Dsui_0620 0.21 -1.4 615,988 + -0.4 615,990 - +0.6 616,067 + Dsui_0620 0.30 +0.6 616,072 + Dsui_0620 0.31 -1.0 616,080 - Dsui_0620 0.32 -2.2 616,137 - Dsui_0620 0.38 -2.9 616,179 - Dsui_0620 0.42 +0.6 616,226 - Dsui_0620 0.48 -1.7 616,231 + Dsui_0620 0.48 +0.6 616,290 + Dsui_0620 0.54 -2.6 616,533 + Dsui_0620 0.81 -2.7 616,681 + +0.6 616,825 - -0.4 617,055 + Dsui_0621 0.69 +0.6 617,108 + Dsui_0621 0.79 +0.6 617,149 - Dsui_0621 0.88 -2.4 617,177 + -0.4 617,185 - -1.1 617,187 + +0.6 617,430 - -1.0 617,518 + Dsui_0622 0.20 -3.7 617,550 - Dsui_0622 0.25 +0.6 617,621 + Dsui_0622 0.37 -0.7 617,634 - Dsui_0622 0.39 -2.9 617,639 - Dsui_0622 0.40 -2.2 617,687 - Dsui_0622 0.48 -1.4
Or see this region's nucleotide sequence