Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0580 and Dsui_0581 are separated by 7 nucleotides Dsui_0581 and Dsui_0582 are separated by 74 nucleotides
Dsui_0580: Dsui_0580 - ATP-dependent protease HslVU, ATPase subunit, at 577,832 to 579,169
_0580
Dsui_0581: Dsui_0581 - ATP-dependent protease HslVU, peptidase subunit, at 579,177 to 579,713
_0581
Dsui_0582: Dsui_0582 - anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 579,788 to 581,017
_0582
Position (kb) 579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 578.212 kb on + strand, within Dsui_0580 at 578.437 kb on - strand, within Dsui_0580 at 578.769 kb on - strand, within Dsui_0580 at 578.890 kb on + strand, within Dsui_0580 at 578.900 kb on + strand, within Dsui_0580 at 579.053 kb on - strand at 579.102 kb on + strand at 579.279 kb on - strand, within Dsui_0581 at 579.519 kb on - strand, within Dsui_0581 at 579.538 kb on - strand, within Dsui_0581 at 579.580 kb on + strand, within Dsui_0581 at 579.598 kb on - strand, within Dsui_0581 at 579.640 kb on - strand, within Dsui_0581 at 579.686 kb on + strand at 579.707 kb on + strand at 580.134 kb on - strand, within Dsui_0582 at 580.168 kb on - strand, within Dsui_0582 at 580.389 kb on + strand at 580.389 kb on + strand at 580.397 kb on - strand, within Dsui_0582 at 580.590 kb on - strand, within Dsui_0582
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 578,212 + Dsui_0580 0.28 -0.5 578,437 - Dsui_0580 0.45 -3.1 578,769 - Dsui_0580 0.70 -0.9 578,890 + Dsui_0580 0.79 +0.5 578,900 + Dsui_0580 0.80 +0.5 579,053 - -0.4 579,102 + +0.5 579,279 - Dsui_0581 0.19 -0.6 579,519 - Dsui_0581 0.64 -0.9 579,538 - Dsui_0581 0.67 -1.0 579,580 + Dsui_0581 0.75 -2.3 579,598 - Dsui_0581 0.78 -0.5 579,640 - Dsui_0581 0.86 -0.5 579,686 + +0.5 579,707 + +0.5 580,134 - Dsui_0582 0.28 -0.5 580,168 - Dsui_0582 0.31 -0.1 580,389 + +0.5 580,389 + +0.5 580,397 - Dsui_0582 0.50 -0.7 580,590 - Dsui_0582 0.65 -0.3
Or see this region's nucleotide sequence