Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0488 and Dsui_0489 are separated by 72 nucleotides Dsui_0489 and Dsui_0490 are separated by 68 nucleotides Dsui_0490 and Dsui_0491 overlap by 4 nucleotides
Dsui_0488: Dsui_0488 - EamA-like transporter family, at 490,617 to 491,474
_0488
Dsui_0489: Dsui_0489 - DNA-binding regulatory protein, YebC/PmpR family, at 491,547 to 492,272
_0489
Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861
_0490
Dsui_0491: Dsui_0491 - putative oxygen-independent coproporphyrinogen III oxidase, at 493,858 to 495,096
_0491
Position (kb) 492
493
494 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 491.355 kb on - strand, within Dsui_0488 at 491.357 kb on + strand, within Dsui_0488 at 491.395 kb on + strand at 491.436 kb on + strand at 491.442 kb on - strand at 491.568 kb on + strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.576 kb on - strand at 491.577 kb on - strand at 491.613 kb on - strand at 491.615 kb on + strand at 491.717 kb on - strand, within Dsui_0489 at 492.008 kb on - strand, within Dsui_0489 at 492.108 kb on - strand, within Dsui_0489 at 492.196 kb on + strand at 492.199 kb on - strand, within Dsui_0489 at 492.204 kb on - strand at 492.212 kb on + strand at 492.237 kb on - strand at 492.252 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.261 kb on - strand at 492.273 kb on + strand at 492.273 kb on + strand at 492.397 kb on - strand at 492.416 kb on + strand at 492.443 kb on + strand at 492.522 kb on - strand, within Dsui_0490 at 492.527 kb on - strand, within Dsui_0490 at 492.541 kb on - strand, within Dsui_0490 at 492.907 kb on - strand, within Dsui_0490 at 492.927 kb on - strand, within Dsui_0490 at 492.967 kb on + strand, within Dsui_0490 at 492.977 kb on + strand, within Dsui_0490 at 493.086 kb on + strand, within Dsui_0490 at 493.238 kb on + strand, within Dsui_0490 at 493.304 kb on - strand, within Dsui_0490 at 493.335 kb on - strand, within Dsui_0490 at 493.357 kb on - strand, within Dsui_0490 at 493.358 kb on - strand, within Dsui_0490 at 493.598 kb on - strand, within Dsui_0490 at 493.627 kb on + strand, within Dsui_0490 at 493.635 kb on - strand, within Dsui_0490 at 493.650 kb on - strand, within Dsui_0490 at 493.829 kb on + strand at 493.846 kb on - strand at 493.942 kb on + strand at 494.018 kb on - strand, within Dsui_0491 at 494.085 kb on + strand, within Dsui_0491 at 494.169 kb on - strand, within Dsui_0491 at 494.208 kb on - strand, within Dsui_0491 at 494.426 kb on - strand, within Dsui_0491 at 494.495 kb on + strand at 494.500 kb on + strand, within Dsui_0491 at 494.573 kb on + strand, within Dsui_0491 at 494.593 kb on - strand, within Dsui_0491 at 494.609 kb on + strand, within Dsui_0491 at 494.609 kb on + strand, within Dsui_0491 at 494.610 kb on - strand, within Dsui_0491 at 494.715 kb on + strand, within Dsui_0491 at 494.755 kb on + strand, within Dsui_0491 at 494.800 kb on - strand, within Dsui_0491 at 494.810 kb on - strand, within Dsui_0491 at 494.810 kb on - strand, within Dsui_0491 at 494.810 kb on - strand, within Dsui_0491 at 494.855 kb on - strand, within Dsui_0491
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 491,355 - Dsui_0488 0.86 -0.9 491,357 + Dsui_0488 0.86 -2.6 491,395 + -1.8 491,436 + -1.0 491,442 - -1.4 491,568 + -0.5 491,576 - -4.5 491,576 - -3.9 491,576 - -3.9 491,577 - -1.6 491,613 - -5.1 491,615 + +0.5 491,717 - Dsui_0489 0.23 -6.5 492,008 - Dsui_0489 0.63 -4.8 492,108 - Dsui_0489 0.77 -6.8 492,196 + +0.5 492,199 - Dsui_0489 0.90 -5.2 492,204 - -2.8 492,212 + +0.5 492,237 - -3.3 492,252 - -6.9 492,261 - -6.9 492,261 - -5.2 492,261 - -5.3 492,273 + +0.5 492,273 + -1.8 492,397 - +0.5 492,416 + -0.3 492,443 + -0.7 492,522 - Dsui_0490 0.12 +0.5 492,527 - Dsui_0490 0.12 -2.1 492,541 - Dsui_0490 0.13 -1.1 492,907 - Dsui_0490 0.37 +0.5 492,927 - Dsui_0490 0.39 -0.5 492,967 + Dsui_0490 0.41 -0.5 492,977 + Dsui_0490 0.42 +0.2 493,086 + Dsui_0490 0.49 -1.0 493,238 + Dsui_0490 0.59 -0.7 493,304 - Dsui_0490 0.63 +0.5 493,335 - Dsui_0490 0.65 +0.5 493,357 - Dsui_0490 0.67 -1.8 493,358 - Dsui_0490 0.67 -1.3 493,598 - Dsui_0490 0.83 -1.6 493,627 + Dsui_0490 0.85 -0.7 493,635 - Dsui_0490 0.85 -2.5 493,650 - Dsui_0490 0.86 +0.5 493,829 + -0.3 493,846 - -0.9 493,942 + -1.1 494,018 - Dsui_0491 0.13 -1.7 494,085 + Dsui_0491 0.18 -0.0 494,169 - Dsui_0491 0.25 -0.9 494,208 - Dsui_0491 0.28 -0.8 494,426 - Dsui_0491 0.46 -1.1 494,495 + +0.5 494,500 + Dsui_0491 0.52 -0.8 494,573 + Dsui_0491 0.58 -0.5 494,593 - Dsui_0491 0.59 -1.1 494,609 + Dsui_0491 0.61 -0.5 494,609 + Dsui_0491 0.61 -0.5 494,610 - Dsui_0491 0.61 -0.6 494,715 + Dsui_0491 0.69 +0.5 494,755 + Dsui_0491 0.72 +0.5 494,800 - Dsui_0491 0.76 -1.4 494,810 - Dsui_0491 0.77 -1.7 494,810 - Dsui_0491 0.77 -0.9 494,810 - Dsui_0491 0.77 -0.1 494,855 - Dsui_0491 0.80 -1.6
Or see this region's nucleotide sequence