Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0429 and Dsui_0430 are separated by 142 nucleotides Dsui_0430 and Dsui_0431 are separated by 12 nucleotides Dsui_0431 and Dsui_0432 are separated by 57 nucleotides
Dsui_0429: Dsui_0429 - cystathionine beta-lyase/cystathionine gamma-synthase, at 434,813 to 435,961
_0429
Dsui_0430: Dsui_0430 - ABC-type branched-chain amino acid transport system, periplasmic component, at 436,104 to 437,216
_0430
Dsui_0431: Dsui_0431 - putative permease, DMT superfamily, at 437,229 to 438,065
_0431
Dsui_0432: Dsui_0432 - hypothetical protein, at 438,123 to 439,199
_0432
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 435.388 kb on + strand at 435.409 kb on - strand, within Dsui_0429 at 435.409 kb on - strand at 435.524 kb on + strand, within Dsui_0429 at 435.621 kb on - strand, within Dsui_0429 at 435.641 kb on - strand, within Dsui_0429 at 435.641 kb on - strand, within Dsui_0429 at 435.773 kb on + strand, within Dsui_0429 at 435.847 kb on - strand at 436.061 kb on - strand at 436.061 kb on - strand at 436.100 kb on - strand at 436.129 kb on + strand at 436.247 kb on + strand, within Dsui_0430 at 436.286 kb on + strand, within Dsui_0430 at 436.327 kb on + strand, within Dsui_0430 at 436.347 kb on - strand, within Dsui_0430 at 436.404 kb on + strand, within Dsui_0430 at 436.474 kb on - strand, within Dsui_0430 at 436.474 kb on - strand, within Dsui_0430 at 436.584 kb on + strand, within Dsui_0430 at 436.720 kb on - strand, within Dsui_0430 at 436.720 kb on - strand, within Dsui_0430 at 436.744 kb on - strand, within Dsui_0430 at 436.832 kb on + strand, within Dsui_0430 at 436.906 kb on - strand at 436.942 kb on - strand, within Dsui_0430 at 436.978 kb on - strand, within Dsui_0430 at 436.990 kb on + strand, within Dsui_0430 at 436.998 kb on - strand, within Dsui_0430 at 437.164 kb on - strand at 437.217 kb on + strand at 437.220 kb on - strand at 437.225 kb on - strand at 437.225 kb on - strand at 437.415 kb on - strand, within Dsui_0431 at 437.417 kb on - strand, within Dsui_0431 at 437.422 kb on - strand, within Dsui_0431 at 437.455 kb on + strand, within Dsui_0431 at 437.455 kb on + strand, within Dsui_0431 at 437.598 kb on - strand, within Dsui_0431 at 437.611 kb on + strand, within Dsui_0431 at 437.635 kb on - strand, within Dsui_0431 at 437.637 kb on + strand, within Dsui_0431 at 437.645 kb on - strand, within Dsui_0431 at 437.702 kb on + strand, within Dsui_0431 at 437.744 kb on + strand at 437.852 kb on - strand, within Dsui_0431 at 437.856 kb on - strand, within Dsui_0431 at 437.859 kb on + strand at 437.890 kb on - strand, within Dsui_0431 at 437.932 kb on - strand at 437.948 kb on + strand, within Dsui_0431 at 437.971 kb on - strand, within Dsui_0431 at 438.026 kb on - strand at 438.044 kb on - strand at 438.060 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 435,388 + +0.6 435,409 - Dsui_0429 0.52 -1.7 435,409 - +0.6 435,524 + Dsui_0429 0.62 -0.4 435,621 - Dsui_0429 0.70 +0.6 435,641 - Dsui_0429 0.72 +0.6 435,641 - Dsui_0429 0.72 -2.9 435,773 + Dsui_0429 0.84 -1.0 435,847 - +0.6 436,061 - -2.0 436,061 - +0.6 436,100 - +0.6 436,129 + -1.1 436,247 + Dsui_0430 0.13 -1.9 436,286 + Dsui_0430 0.16 -1.9 436,327 + Dsui_0430 0.20 -2.1 436,347 - Dsui_0430 0.22 +0.6 436,404 + Dsui_0430 0.27 -1.2 436,474 - Dsui_0430 0.33 -1.0 436,474 - Dsui_0430 0.33 -1.4 436,584 + Dsui_0430 0.43 -1.4 436,720 - Dsui_0430 0.55 -0.4 436,720 - Dsui_0430 0.55 -1.0 436,744 - Dsui_0430 0.58 -0.4 436,832 + Dsui_0430 0.65 -1.7 436,906 - +0.6 436,942 - Dsui_0430 0.75 -2.0 436,978 - Dsui_0430 0.79 +0.6 436,990 + Dsui_0430 0.80 -0.9 436,998 - Dsui_0430 0.80 -1.4 437,164 - -0.4 437,217 + -1.5 437,220 - -1.7 437,225 - +0.0 437,225 - +0.6 437,415 - Dsui_0431 0.22 -2.0 437,417 - Dsui_0431 0.22 -2.0 437,422 - Dsui_0431 0.23 +0.6 437,455 + Dsui_0431 0.27 -2.0 437,455 + Dsui_0431 0.27 -2.0 437,598 - Dsui_0431 0.44 -1.0 437,611 + Dsui_0431 0.46 -0.4 437,635 - Dsui_0431 0.49 -2.4 437,637 + Dsui_0431 0.49 -2.4 437,645 - Dsui_0431 0.50 -1.7 437,702 + Dsui_0431 0.57 +0.6 437,744 + +0.6 437,852 - Dsui_0431 0.74 -0.4 437,856 - Dsui_0431 0.75 -0.4 437,859 + +0.6 437,890 - Dsui_0431 0.79 -1.4 437,932 - -0.4 437,948 + Dsui_0431 0.86 -0.4 437,971 - Dsui_0431 0.89 -3.0 438,026 - -2.4 438,044 - -1.4 438,060 + -2.0
Or see this region's nucleotide sequence