Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0374 and Dsui_0375 are separated by 49 nucleotides Dsui_0375 and Dsui_0376 are separated by 26 nucleotides Dsui_0376 and Dsui_0377 are separated by 64 nucleotides Dsui_0377 and Dsui_0378 are separated by 172 nucleotides Dsui_0378 and Dsui_0379 are separated by 257 nucleotides
Dsui_0374: Dsui_0374 - translation elongation factor TU, at 372,607 to 373,797
_0374
Dsui_0375: Dsui_0375 - tRNA-Thr, at 373,847 to 373,921
_0375
Dsui_0376: Dsui_0376 - tRNA-Gly, at 373,948 to 374,021
_0376
Dsui_0377: Dsui_0377 - tRNA-Tyr, at 374,086 to 374,170
_0377
Dsui_0378: Dsui_0378 - FAD/FMN-dependent dehydrogenase, at 374,343 to 375,740
_0378
Dsui_0379: Dsui_0379 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 375,998 to 379,549
_0379
Position (kb) 374
375
376 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 374.217 kb on - strand at 374.312 kb on - strand at 374.327 kb on + strand at 374.340 kb on + strand at 374.378 kb on + strand at 374.378 kb on + strand at 374.378 kb on + strand at 374.386 kb on - strand at 374.386 kb on - strand at 374.477 kb on + strand at 374.589 kb on + strand, within Dsui_0378 at 374.597 kb on - strand, within Dsui_0378 at 374.804 kb on + strand, within Dsui_0378 at 374.848 kb on + strand, within Dsui_0378 at 374.848 kb on + strand, within Dsui_0378 at 374.944 kb on + strand, within Dsui_0378 at 374.982 kb on + strand, within Dsui_0378 at 374.988 kb on - strand, within Dsui_0378 at 375.070 kb on - strand, within Dsui_0378 at 375.070 kb on - strand, within Dsui_0378 at 375.078 kb on - strand, within Dsui_0378 at 375.080 kb on + strand, within Dsui_0378 at 375.156 kb on - strand, within Dsui_0378 at 375.197 kb on + strand, within Dsui_0378 at 375.266 kb on + strand, within Dsui_0378 at 375.341 kb on + strand, within Dsui_0378 at 375.355 kb on - strand, within Dsui_0378 at 375.388 kb on + strand, within Dsui_0378 at 375.466 kb on - strand, within Dsui_0378 at 375.604 kb on + strand at 375.631 kb on - strand at 375.668 kb on - strand at 375.673 kb on + strand at 375.674 kb on + strand at 375.681 kb on - strand at 375.684 kb on + strand at 375.692 kb on - strand at 375.694 kb on + strand at 375.694 kb on + strand at 375.748 kb on + strand at 375.841 kb on + strand at 375.894 kb on + strand at 375.997 kb on - strand at 376.030 kb on + strand at 376.057 kb on + strand at 376.062 kb on - strand at 376.067 kb on + strand at 376.103 kb on - strand at 376.150 kb on + strand at 376.150 kb on + strand at 376.150 kb on - strand at 376.204 kb on + strand at 376.207 kb on - strand at 376.208 kb on - strand at 376.212 kb on - strand at 376.214 kb on - strand at 376.231 kb on - strand at 376.268 kb on - strand at 376.336 kb on + strand at 376.387 kb on + strand, within Dsui_0379 at 376.537 kb on + strand at 376.550 kb on + strand, within Dsui_0379 at 376.550 kb on + strand, within Dsui_0379 at 376.608 kb on + strand, within Dsui_0379 at 376.616 kb on - strand, within Dsui_0379 at 376.640 kb on + strand, within Dsui_0379 at 376.666 kb on - strand, within Dsui_0379 at 376.684 kb on - strand, within Dsui_0379 at 376.684 kb on - strand, within Dsui_0379
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 374,217 - +0.7 374,312 - -1.7 374,327 + +0.6 374,340 + -1.7 374,378 + -0.4 374,378 + -1.2 374,378 + -0.4 374,386 - +0.6 374,386 - +0.6 374,477 + -1.1 374,589 + Dsui_0378 0.18 -1.2 374,597 - Dsui_0378 0.18 -0.9 374,804 + Dsui_0378 0.33 -1.4 374,848 + Dsui_0378 0.36 +3.0 374,848 + Dsui_0378 0.36 +0.4 374,944 + Dsui_0378 0.43 -1.3 374,982 + Dsui_0378 0.46 -0.8 374,988 - Dsui_0378 0.46 -1.4 375,070 - Dsui_0378 0.52 +0.6 375,070 - Dsui_0378 0.52 +0.6 375,078 - Dsui_0378 0.53 +0.6 375,080 + Dsui_0378 0.53 +0.3 375,156 - Dsui_0378 0.58 -0.4 375,197 + Dsui_0378 0.61 -0.4 375,266 + Dsui_0378 0.66 -0.4 375,341 + Dsui_0378 0.71 -1.4 375,355 - Dsui_0378 0.72 -0.9 375,388 + Dsui_0378 0.75 -0.9 375,466 - Dsui_0378 0.80 +0.6 375,604 + -1.4 375,631 - -0.4 375,668 - -1.4 375,673 + -0.1 375,674 + -1.3 375,681 - +0.6 375,684 + -1.7 375,692 - +0.6 375,694 + -0.9 375,694 + +0.1 375,748 + -2.1 375,841 + +0.6 375,894 + -0.5 375,997 - -0.9 376,030 + -0.2 376,057 + -1.9 376,062 - +0.6 376,067 + +0.1 376,103 - +0.6 376,150 + -0.9 376,150 + -0.4 376,150 - +0.6 376,204 + -0.9 376,207 - +0.6 376,208 - -0.4 376,212 - -0.4 376,214 - -1.7 376,231 - +0.6 376,268 - +0.6 376,336 + -0.4 376,387 + Dsui_0379 0.11 +0.6 376,537 + +0.6 376,550 + Dsui_0379 0.16 +0.6 376,550 + Dsui_0379 0.16 -0.4 376,608 + Dsui_0379 0.17 -0.4 376,616 - Dsui_0379 0.17 +0.6 376,640 + Dsui_0379 0.18 +0.6 376,666 - Dsui_0379 0.19 -0.9 376,684 - Dsui_0379 0.19 +0.6 376,684 - Dsui_0379 0.19 +0.6
Or see this region's nucleotide sequence