Strain Fitness in Dechlorosoma suillum PS around Dsui_0329

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0328 and Dsui_0329 are separated by 49 nucleotidesDsui_0329 and Dsui_0330 overlap by 4 nucleotidesDsui_0330 and Dsui_0331 overlap by 4 nucleotides Dsui_0328: Dsui_0328 - fused permease/ATPase component of ABC transporter involved in Fe-S cluster assembly, at 334,576 to 336,405 _0328 Dsui_0329: Dsui_0329 - PAS domain S-box, at 336,455 to 339,163 _0329 Dsui_0330: Dsui_0330 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 339,160 to 340,053 _0330 Dsui_0331: Dsui_0331 - PAS domain S-box, at 340,050 to 341,588 _0331 Position (kb) 336 337 338 339 340Strain fitness (log2 ratio) -3 -2 -1 0 1at 335.466 kb on + strand, within Dsui_0328at 335.474 kb on - strand, within Dsui_0328at 335.497 kb on + strand, within Dsui_0328at 335.609 kb on + strand, within Dsui_0328at 335.634 kb on - strand, within Dsui_0328at 335.697 kb on + strand, within Dsui_0328at 335.705 kb on - strand, within Dsui_0328at 335.724 kb on - strand, within Dsui_0328at 335.731 kb on - strand, within Dsui_0328at 335.737 kb on + strand, within Dsui_0328at 335.739 kb on - strand, within Dsui_0328at 335.890 kb on + strand, within Dsui_0328at 335.890 kb on + strand, within Dsui_0328at 335.952 kb on - strand, within Dsui_0328at 336.067 kb on - strand, within Dsui_0328at 336.136 kb on + strand, within Dsui_0328at 336.152 kb on - strand, within Dsui_0328at 336.152 kb on - strand, within Dsui_0328at 336.230 kb on - strandat 336.330 kb on + strandat 336.330 kb on + strandat 336.333 kb on - strandat 336.391 kb on - strandat 336.394 kb on + strandat 336.465 kb on - strandat 336.484 kb on - strandat 336.595 kb on - strandat 336.689 kb on - strandat 336.765 kb on + strand, within Dsui_0329at 336.803 kb on - strandat 336.843 kb on - strand, within Dsui_0329at 336.905 kb on - strand, within Dsui_0329at 337.106 kb on + strand, within Dsui_0329at 337.111 kb on + strand, within Dsui_0329at 337.114 kb on - strand, within Dsui_0329at 337.134 kb on + strand, within Dsui_0329at 337.160 kb on + strand, within Dsui_0329at 337.160 kb on + strand, within Dsui_0329at 337.160 kb on + strand, within Dsui_0329at 337.165 kb on + strand, within Dsui_0329at 337.168 kb on - strandat 337.183 kb on + strand, within Dsui_0329at 337.183 kb on + strand, within Dsui_0329at 337.192 kb on + strand, within Dsui_0329at 337.209 kb on + strand, within Dsui_0329at 337.217 kb on - strand, within Dsui_0329at 337.217 kb on - strand, within Dsui_0329at 337.401 kb on + strand, within Dsui_0329at 337.419 kb on - strandat 337.473 kb on + strand, within Dsui_0329at 337.579 kb on + strand, within Dsui_0329at 337.856 kb on - strandat 337.979 kb on - strand, within Dsui_0329at 337.988 kb on + strand, within Dsui_0329at 337.998 kb on - strandat 338.028 kb on - strandat 338.088 kb on - strandat 338.141 kb on - strand, within Dsui_0329at 338.293 kb on - strand, within Dsui_0329at 338.293 kb on - strand, within Dsui_0329at 338.378 kb on - strand, within Dsui_0329at 338.378 kb on - strand, within Dsui_0329at 338.460 kb on - strand, within Dsui_0329at 338.474 kb on + strand, within Dsui_0329at 338.514 kb on - strand, within Dsui_0329at 338.539 kb on + strand, within Dsui_0329at 338.596 kb on - strandat 338.616 kb on - strand, within Dsui_0329at 338.752 kb on + strand, within Dsui_0329at 338.752 kb on + strand, within Dsui_0329at 338.765 kb on + strand, within Dsui_0329at 338.808 kb on - strand, within Dsui_0329at 338.847 kb on + strand, within Dsui_0329at 338.945 kb on + strandat 338.963 kb on - strandat 338.963 kb on - strandat 339.020 kb on + strandat 339.021 kb on + strandat 339.079 kb on - strandat 339.156 kb on + strandat 339.172 kb on - strandat 339.240 kb on + strandat 339.251 kb on - strand, within Dsui_0330at 339.259 kb on - strand, within Dsui_0330at 339.278 kb on - strand, within Dsui_0330at 339.354 kb on + strand, within Dsui_0330at 339.363 kb on + strand, within Dsui_0330at 339.427 kb on + strand, within Dsui_0330at 339.450 kb on + strand, within Dsui_0330at 339.470 kb on - strand, within Dsui_0330at 339.525 kb on - strand, within Dsui_0330at 339.528 kb on + strand, within Dsui_0330at 339.555 kb on - strand, within Dsui_0330at 339.572 kb on + strand, within Dsui_0330at 339.578 kb on - strand, within Dsui_0330at 339.652 kb on + strand, within Dsui_0330at 339.652 kb on + strand, within Dsui_0330at 339.657 kb on + strand, within Dsui_0330at 339.660 kb on - strand, within Dsui_0330at 339.665 kb on - strand, within Dsui_0330at 339.683 kb on + strand, within Dsui_0330at 339.886 kb on - strand, within Dsui_0330at 339.886 kb on - strand, within Dsui_0330at 339.888 kb on + strand, within Dsui_0330at 339.972 kb on - strandat 340.013 kb on - strandat 340.021 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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335,466 + Dsui_0328 0.49 -2.4
335,474 - Dsui_0328 0.49 -0.9
335,497 + Dsui_0328 0.50 -1.0
335,609 + Dsui_0328 0.56 -0.4
335,634 - Dsui_0328 0.58 -0.4
335,697 + Dsui_0328 0.61 +0.1
335,705 - Dsui_0328 0.62 +0.6
335,724 - Dsui_0328 0.63 +0.6
335,731 - Dsui_0328 0.63 +0.6
335,737 + Dsui_0328 0.63 -1.5
335,739 - Dsui_0328 0.64 -0.4
335,890 + Dsui_0328 0.72 -0.5
335,890 + Dsui_0328 0.72 +0.2
335,952 - Dsui_0328 0.75 -1.9
336,067 - Dsui_0328 0.81 +0.6
336,136 + Dsui_0328 0.85 -0.5
336,152 - Dsui_0328 0.86 +0.6
336,152 - Dsui_0328 0.86 +0.6
336,230 - -2.2
336,330 + -0.8
336,330 + -1.7
336,333 - -0.4
336,391 - -0.4
336,394 + -0.7
336,465 - -0.9
336,484 - +0.6
336,595 - -1.4
336,689 - -1.4
336,765 + Dsui_0329 0.11 -2.8
336,803 - +0.6
336,843 - Dsui_0329 0.14 +0.6
336,905 - Dsui_0329 0.17 +0.6
337,106 + Dsui_0329 0.24 +0.1
337,111 + Dsui_0329 0.24 -0.9
337,114 - Dsui_0329 0.24 -0.9
337,134 + Dsui_0329 0.25 -1.7
337,160 + Dsui_0329 0.26 -0.5
337,160 + Dsui_0329 0.26 +0.4
337,160 + Dsui_0329 0.26 -2.4
337,165 + Dsui_0329 0.26 -3.5
337,168 - +0.6
337,183 + Dsui_0329 0.27 -0.4
337,183 + Dsui_0329 0.27 -1.8
337,192 + Dsui_0329 0.27 +1.1
337,209 + Dsui_0329 0.28 -0.2
337,217 - Dsui_0329 0.28 +0.6
337,217 - Dsui_0329 0.28 +0.6
337,401 + Dsui_0329 0.35 -0.9
337,419 - -0.4
337,473 + Dsui_0329 0.38 +0.6
337,579 + Dsui_0329 0.41 -1.7
337,856 - +0.6
337,979 - Dsui_0329 0.56 -0.9
337,988 + Dsui_0329 0.57 -0.2
337,998 - +0.6
338,028 - +0.6
338,088 - +0.6
338,141 - Dsui_0329 0.62 -1.4
338,293 - Dsui_0329 0.68 +0.6
338,293 - Dsui_0329 0.68 +0.6
338,378 - Dsui_0329 0.71 -1.9
338,378 - Dsui_0329 0.71 -0.9
338,460 - Dsui_0329 0.74 -0.4
338,474 + Dsui_0329 0.75 +0.1
338,514 - Dsui_0329 0.76 +0.6
338,539 + Dsui_0329 0.77 -0.9
338,596 - +0.6
338,616 - Dsui_0329 0.80 +0.6
338,752 + Dsui_0329 0.85 -0.5
338,752 + Dsui_0329 0.85 -1.9
338,765 + Dsui_0329 0.85 -2.2
338,808 - Dsui_0329 0.87 -0.4
338,847 + Dsui_0329 0.88 -1.4
338,945 + +0.1
338,963 - -0.4
338,963 - +0.6
339,020 + +0.4
339,021 + -1.7
339,079 - +0.6
339,156 + -1.7
339,172 - +0.3
339,240 + -0.6
339,251 - Dsui_0330 0.10 +0.6
339,259 - Dsui_0330 0.11 +0.6
339,278 - Dsui_0330 0.13 -1.4
339,354 + Dsui_0330 0.22 -1.2
339,363 + Dsui_0330 0.23 -1.1
339,427 + Dsui_0330 0.30 -0.5
339,450 + Dsui_0330 0.32 -0.9
339,470 - Dsui_0330 0.35 +0.6
339,525 - Dsui_0330 0.41 +0.6
339,528 + Dsui_0330 0.41 -0.9
339,555 - Dsui_0330 0.44 -2.4
339,572 + Dsui_0330 0.46 -1.0
339,578 - Dsui_0330 0.47 -1.4
339,652 + Dsui_0330 0.55 -0.5
339,652 + Dsui_0330 0.55 -0.3
339,657 + Dsui_0330 0.56 -0.4
339,660 - Dsui_0330 0.56 -0.4
339,665 - Dsui_0330 0.56 +0.6
339,683 + Dsui_0330 0.59 +0.1
339,886 - Dsui_0330 0.81 -0.4
339,886 - Dsui_0330 0.81 -0.4
339,888 + Dsui_0330 0.81 -0.6
339,972 - -0.4
340,013 - -1.9
340,021 + -0.9

Or see this region's nucleotide sequence