Strain Fitness in Dechlorosoma suillum PS around Dsui_0319

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0318 and Dsui_0319 are separated by 16 nucleotidesDsui_0319 and Dsui_0320 are separated by 261 nucleotides Dsui_0318: Dsui_0318 - 3-hydroxyacyl-CoA dehydrogenase, at 319,641 to 322,028 _0318 Dsui_0319: Dsui_0319 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 322,045 to 323,688 _0319 Dsui_0320: Dsui_0320 - DNA-binding domain-containing protein, AraC-type, at 323,950 to 324,957 _0320 Position (kb) 322 323 324Strain fitness (log2 ratio) -3 -2 -1 0 1at 321.099 kb on - strand, within Dsui_0318at 321.111 kb on + strand, within Dsui_0318at 321.259 kb on + strand, within Dsui_0318at 321.259 kb on + strandat 321.267 kb on - strand, within Dsui_0318at 321.359 kb on - strand, within Dsui_0318at 321.387 kb on + strand, within Dsui_0318at 321.469 kb on - strand, within Dsui_0318at 321.521 kb on + strand, within Dsui_0318at 321.622 kb on + strandat 321.622 kb on + strandat 321.630 kb on - strand, within Dsui_0318at 321.647 kb on + strand, within Dsui_0318at 321.647 kb on + strand, within Dsui_0318at 321.650 kb on - strandat 321.655 kb on - strand, within Dsui_0318at 321.655 kb on - strand, within Dsui_0318at 321.655 kb on - strand, within Dsui_0318at 321.780 kb on + strand, within Dsui_0318at 321.807 kb on - strandat 321.869 kb on - strandat 321.869 kb on - strandat 322.032 kb on + strandat 322.161 kb on + strandat 322.207 kb on - strandat 322.223 kb on + strandat 322.264 kb on - strand, within Dsui_0319at 322.475 kb on - strand, within Dsui_0319at 322.519 kb on - strand, within Dsui_0319at 322.586 kb on - strand, within Dsui_0319at 322.604 kb on + strand, within Dsui_0319at 322.739 kb on + strand, within Dsui_0319at 322.744 kb on + strand, within Dsui_0319at 322.751 kb on + strand, within Dsui_0319at 322.751 kb on + strand, within Dsui_0319at 322.847 kb on - strand, within Dsui_0319at 322.922 kb on - strand, within Dsui_0319at 322.964 kb on + strandat 322.969 kb on + strandat 322.977 kb on - strand, within Dsui_0319at 323.044 kb on + strand, within Dsui_0319at 323.044 kb on + strand, within Dsui_0319at 323.049 kb on + strandat 323.052 kb on - strand, within Dsui_0319at 323.057 kb on - strand, within Dsui_0319at 323.057 kb on - strand, within Dsui_0319at 323.061 kb on + strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.113 kb on - strand, within Dsui_0319at 323.277 kb on - strand, within Dsui_0319at 323.339 kb on + strand, within Dsui_0319at 323.352 kb on - strand, within Dsui_0319at 323.363 kb on - strand, within Dsui_0319at 323.412 kb on - strand, within Dsui_0319at 323.469 kb on - strand, within Dsui_0319at 323.517 kb on - strand, within Dsui_0319at 323.517 kb on - strand, within Dsui_0319at 323.517 kb on - strand, within Dsui_0319at 323.522 kb on - strand, within Dsui_0319at 323.565 kb on - strandat 323.650 kb on - strandat 323.655 kb on - strandat 323.660 kb on + strandat 323.690 kb on + strandat 323.717 kb on - strandat 323.791 kb on + strandat 323.954 kb on - strandat 324.111 kb on - strand, within Dsui_0320at 324.178 kb on + strand, within Dsui_0320at 324.206 kb on + strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.214 kb on - strand, within Dsui_0320at 324.231 kb on + strand, within Dsui_0320at 324.231 kb on + strand, within Dsui_0320at 324.241 kb on + strand, within Dsui_0320at 324.249 kb on - strand, within Dsui_0320at 324.249 kb on - strand, within Dsui_0320at 324.258 kb on - strand, within Dsui_0320at 324.373 kb on - strand, within Dsui_0320at 324.383 kb on + strand, within Dsui_0320at 324.396 kb on - strand, within Dsui_0320at 324.407 kb on + strand, within Dsui_0320at 324.436 kb on - strand, within Dsui_0320at 324.475 kb on + strand, within Dsui_0320at 324.497 kb on + strand, within Dsui_0320at 324.610 kb on + strand, within Dsui_0320at 324.627 kb on + strand, within Dsui_0320at 324.656 kb on + strand, within Dsui_0320at 324.684 kb on - strand, within Dsui_0320

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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321,099 - Dsui_0318 0.61 +0.7
321,111 + Dsui_0318 0.62 -1.3
321,259 + Dsui_0318 0.68 +0.7
321,259 + +0.7
321,267 - Dsui_0318 0.68 +0.8
321,359 - Dsui_0318 0.72 -1.3
321,387 + Dsui_0318 0.73 +1.7
321,469 - Dsui_0318 0.77 -0.3
321,521 + Dsui_0318 0.79 +0.7
321,622 + +0.7
321,622 + +0.7
321,630 - Dsui_0318 0.83 -1.7
321,647 + Dsui_0318 0.84 +0.7
321,647 + Dsui_0318 0.84 -0.3
321,650 - -1.3
321,655 - Dsui_0318 0.84 -0.4
321,655 - Dsui_0318 0.84 -0.9
321,655 - Dsui_0318 0.84 +0.7
321,780 + Dsui_0318 0.90 -0.9
321,807 - -0.4
321,869 - +0.7
321,869 - -0.3
322,032 + +0.7
322,161 + -0.3
322,207 - +0.7
322,223 + +0.7
322,264 - Dsui_0319 0.13 +0.7
322,475 - Dsui_0319 0.26 +0.7
322,519 - Dsui_0319 0.29 +0.7
322,586 - Dsui_0319 0.33 -0.3
322,604 + Dsui_0319 0.34 +0.7
322,739 + Dsui_0319 0.42 -2.3
322,744 + Dsui_0319 0.43 +0.7
322,751 + Dsui_0319 0.43 -1.9
322,751 + Dsui_0319 0.43 -0.3
322,847 - Dsui_0319 0.49 -0.9
322,922 - Dsui_0319 0.53 -1.6
322,964 + -0.3
322,969 + +0.7
322,977 - Dsui_0319 0.57 -0.9
323,044 + Dsui_0319 0.61 -0.3
323,044 + Dsui_0319 0.61 -0.9
323,049 + +0.7
323,052 - Dsui_0319 0.61 -1.3
323,057 - Dsui_0319 0.62 -1.3
323,057 - Dsui_0319 0.62 +0.7
323,061 + Dsui_0319 0.62 -1.6
323,113 - Dsui_0319 0.65 -0.9
323,113 - Dsui_0319 0.65 -0.3
323,113 - Dsui_0319 0.65 -2.8
323,113 - Dsui_0319 0.65 +0.7
323,113 - Dsui_0319 0.65 +0.7
323,113 - Dsui_0319 0.65 -3.3
323,113 - Dsui_0319 0.65 +0.7
323,113 - Dsui_0319 0.65 +0.7
323,113 - Dsui_0319 0.65 +0.7
323,277 - Dsui_0319 0.75 -1.3
323,339 + Dsui_0319 0.79 -0.3
323,352 - Dsui_0319 0.80 +0.7
323,363 - Dsui_0319 0.80 -0.9
323,412 - Dsui_0319 0.83 +0.7
323,469 - Dsui_0319 0.87 +0.7
323,517 - Dsui_0319 0.90 -0.9
323,517 - Dsui_0319 0.90 +0.7
323,517 - Dsui_0319 0.90 -0.3
323,522 - Dsui_0319 0.90 +0.7
323,565 - -0.3
323,650 - +0.7
323,655 - -1.9
323,660 + -0.3
323,690 + +0.7
323,717 - -1.3
323,791 + -2.1
323,954 - -1.9
324,111 - Dsui_0320 0.16 +0.7
324,178 + Dsui_0320 0.23 -0.3
324,206 + Dsui_0320 0.25 -0.4
324,214 - Dsui_0320 0.26 +0.7
324,214 - Dsui_0320 0.26 -1.3
324,214 - Dsui_0320 0.26 -0.9
324,214 - Dsui_0320 0.26 +0.7
324,231 + Dsui_0320 0.28 +0.1
324,231 + Dsui_0320 0.28 -0.5
324,241 + Dsui_0320 0.29 +0.0
324,249 - Dsui_0320 0.30 -1.6
324,249 - Dsui_0320 0.30 -1.9
324,258 - Dsui_0320 0.31 -0.3
324,373 - Dsui_0320 0.42 -1.6
324,383 + Dsui_0320 0.43 -0.2
324,396 - Dsui_0320 0.44 -0.9
324,407 + Dsui_0320 0.45 -0.4
324,436 - Dsui_0320 0.48 -1.9
324,475 + Dsui_0320 0.52 -0.9
324,497 + Dsui_0320 0.54 -0.3
324,610 + Dsui_0320 0.65 -0.5
324,627 + Dsui_0320 0.67 -0.3
324,656 + Dsui_0320 0.70 -0.2
324,684 - Dsui_0320 0.73 -1.3

Or see this region's nucleotide sequence