Experiment: ALP with Cobalt chloride 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0287 and Dsui_0288 are separated by 52 nucleotides Dsui_0288 and Dsui_0289 are separated by 443 nucleotides Dsui_0289 and Dsui_0290 overlap by 4 nucleotides
Dsui_0287: Dsui_0287 - outer membrane protein/peptidoglycan-associated (lipo)protein, at 286,851 to 287,327
_0287
Dsui_0288: Dsui_0288 - hypothetical protein, at 287,380 to 287,595
_0288
Dsui_0289: Dsui_0289 - putative membrane protein, at 288,039 to 288,356
_0289
Dsui_0290: Dsui_0290 - SSS sodium solute transporter, at 288,353 to 290,101
_0290
Position (kb) 288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 287.172 kb on + strand, within Dsui_0287 at 287.194 kb on - strand, within Dsui_0287 at 287.303 kb on + strand at 287.469 kb on + strand, within Dsui_0288 at 287.479 kb on + strand, within Dsui_0288 at 287.487 kb on - strand, within Dsui_0288 at 287.506 kb on + strand, within Dsui_0288 at 287.531 kb on + strand, within Dsui_0288 at 287.539 kb on - strand, within Dsui_0288 at 287.563 kb on - strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.565 kb on + strand, within Dsui_0288 at 287.575 kb on + strand at 287.584 kb on + strand at 287.699 kb on + strand at 287.744 kb on + strand at 287.744 kb on + strand at 287.747 kb on - strand at 288.046 kb on + strand at 288.047 kb on + strand at 288.051 kb on + strand at 288.051 kb on + strand at 288.059 kb on - strand at 288.099 kb on + strand, within Dsui_0289 at 288.204 kb on - strand, within Dsui_0289 at 288.243 kb on + strand, within Dsui_0289 at 288.323 kb on - strand, within Dsui_0289 at 288.333 kb on + strand at 288.379 kb on - strand at 288.386 kb on + strand at 288.387 kb on + strand at 288.392 kb on + strand at 288.395 kb on - strand at 288.395 kb on - strand at 288.449 kb on + strand at 288.502 kb on + strand at 288.555 kb on - strand, within Dsui_0290 at 288.555 kb on - strand, within Dsui_0290 at 288.668 kb on + strand, within Dsui_0290 at 288.676 kb on - strand, within Dsui_0290 at 288.799 kb on - strand, within Dsui_0290 at 288.816 kb on + strand, within Dsui_0290 at 288.816 kb on + strand, within Dsui_0290 at 288.837 kb on + strand, within Dsui_0290 at 288.882 kb on + strand, within Dsui_0290 at 288.893 kb on + strand, within Dsui_0290 at 288.941 kb on + strand, within Dsui_0290 at 288.947 kb on + strand at 288.968 kb on + strand, within Dsui_0290 at 289.028 kb on + strand, within Dsui_0290 at 289.028 kb on - strand, within Dsui_0290 at 289.055 kb on - strand, within Dsui_0290 at 289.078 kb on - strand, within Dsui_0290 at 289.155 kb on - strand, within Dsui_0290 at 289.157 kb on + strand, within Dsui_0290 at 289.183 kb on + strand, within Dsui_0290 at 289.189 kb on - strand, within Dsui_0290 at 289.197 kb on - strand, within Dsui_0290 at 289.256 kb on + strand, within Dsui_0290 at 289.264 kb on - strand, within Dsui_0290 at 289.289 kb on + strand, within Dsui_0290 at 289.292 kb on - strand, within Dsui_0290
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM remove 287,172 + Dsui_0287 0.67 +0.3 287,194 - Dsui_0287 0.72 -0.8 287,303 + +0.3 287,469 + Dsui_0288 0.41 -0.2 287,479 + Dsui_0288 0.46 +0.0 287,487 - Dsui_0288 0.50 -1.9 287,506 + Dsui_0288 0.58 -0.1 287,531 + Dsui_0288 0.70 +0.2 287,539 - Dsui_0288 0.74 -1.9 287,563 - Dsui_0288 0.85 -1.3 287,565 + Dsui_0288 0.86 +0.2 287,565 + Dsui_0288 0.86 +0.1 287,565 + Dsui_0288 0.86 -0.4 287,575 + -0.3 287,584 + -0.6 287,699 + +0.1 287,744 + +0.7 287,744 + -2.3 287,747 - -0.7 288,046 + +0.7 288,047 + -1.3 288,051 + -0.1 288,051 + -1.3 288,059 - -0.9 288,099 + Dsui_0289 0.19 -0.3 288,204 - Dsui_0289 0.52 -0.3 288,243 + Dsui_0289 0.64 -0.6 288,323 - Dsui_0289 0.89 -0.3 288,333 + -0.1 288,379 - -0.3 288,386 + +1.0 288,387 + +1.6 288,392 + +0.3 288,395 - -0.3 288,395 - +0.7 288,449 + +0.8 288,502 + +0.2 288,555 - Dsui_0290 0.12 -0.9 288,555 - Dsui_0290 0.12 -0.3 288,668 + Dsui_0290 0.18 +1.2 288,676 - Dsui_0290 0.18 +0.7 288,799 - Dsui_0290 0.26 -0.9 288,816 + Dsui_0290 0.26 -0.1 288,816 + Dsui_0290 0.26 +0.7 288,837 + Dsui_0290 0.28 +1.3 288,882 + Dsui_0290 0.30 +2.0 288,893 + Dsui_0290 0.31 +0.7 288,941 + Dsui_0290 0.34 +1.3 288,947 + -0.3 288,968 + Dsui_0290 0.35 +0.9 289,028 + Dsui_0290 0.39 +0.8 289,028 - Dsui_0290 0.39 +0.7 289,055 - Dsui_0290 0.40 +0.7 289,078 - Dsui_0290 0.41 -0.9 289,155 - Dsui_0290 0.46 -1.6 289,157 + Dsui_0290 0.46 +0.5 289,183 + Dsui_0290 0.47 +0.7 289,189 - Dsui_0290 0.48 -0.3 289,197 - Dsui_0290 0.48 +0.7 289,256 + Dsui_0290 0.52 -0.6 289,264 - Dsui_0290 0.52 -0.3 289,289 + Dsui_0290 0.54 +0.9 289,292 - Dsui_0290 0.54 -2.5
Or see this region's nucleotide sequence