Strain Fitness in Dechlorosoma suillum PS around Dsui_0039

Experiment: ALP with Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0037 and Dsui_0038 are separated by 85 nucleotidesDsui_0038 and Dsui_0039 are separated by 102 nucleotidesDsui_0039 and Dsui_0040 are separated by 185 nucleotides Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840 _0037 Dsui_0038: Dsui_0038 - HIT family hydrolase, diadenosine tetraphosphate hydrolase, at 34,926 to 35,336 _0038 Dsui_0039: Dsui_0039 - dimethyladenosine transferase, at 35,439 to 36,215 _0039 Dsui_0040: Dsui_0040 - FAD-dependent dehydrogenase, at 36,401 to 38,029 _0040 Position (kb) 35 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 34.461 kb on - strand, within Dsui_0037at 34.476 kb on - strand, within Dsui_0037at 34.482 kb on - strand, within Dsui_0037at 34.611 kb on + strandat 34.721 kb on - strandat 34.761 kb on - strandat 34.810 kb on - strandat 34.860 kb on - strandat 34.876 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.890 kb on + strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.898 kb on - strandat 34.923 kb on + strandat 34.923 kb on + strandat 34.931 kb on - strandat 34.972 kb on + strand, within Dsui_0038at 34.972 kb on + strand, within Dsui_0038at 35.019 kb on + strand, within Dsui_0038at 35.027 kb on - strandat 35.139 kb on + strand, within Dsui_0038at 35.149 kb on + strand, within Dsui_0038at 35.155 kb on + strand, within Dsui_0038at 35.259 kb on + strand, within Dsui_0038at 35.413 kb on - strandat 35.466 kb on + strandat 35.554 kb on + strand, within Dsui_0039at 35.714 kb on + strand, within Dsui_0039at 35.794 kb on + strand, within Dsui_0039at 35.802 kb on + strand, within Dsui_0039at 35.971 kb on + strand, within Dsui_0039at 36.088 kb on + strand, within Dsui_0039at 36.096 kb on - strandat 36.186 kb on + strandat 36.193 kb on - strandat 36.354 kb on + strandat 36.377 kb on + strandat 36.385 kb on - strandat 36.391 kb on + strandat 36.427 kb on + strandat 36.436 kb on - strandat 36.436 kb on - strandat 36.449 kb on + strandat 36.449 kb on + strandat 36.457 kb on - strandat 36.486 kb on - strandat 36.502 kb on + strandat 36.510 kb on - strandat 36.525 kb on + strandat 36.533 kb on - strandat 36.533 kb on - strandat 36.693 kb on + strand, within Dsui_0040at 36.708 kb on + strand, within Dsui_0040at 36.754 kb on - strand, within Dsui_0040at 36.789 kb on - strand, within Dsui_0040at 36.808 kb on + strand, within Dsui_0040at 36.821 kb on - strand, within Dsui_0040at 36.826 kb on + strand, within Dsui_0040at 36.826 kb on - strand, within Dsui_0040at 36.921 kb on - strand, within Dsui_0040at 37.014 kb on + strand, within Dsui_0040at 37.048 kb on + strand, within Dsui_0040at 37.048 kb on + strand, within Dsui_0040at 37.056 kb on - strand, within Dsui_0040at 37.133 kb on + strand, within Dsui_0040at 37.195 kb on + strand, within Dsui_0040

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Cobalt chloride 0.25 mM
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34,461 - Dsui_0037 0.69 -0.2
34,476 - Dsui_0037 0.70 -1.5
34,482 - Dsui_0037 0.70 +0.0
34,611 + +0.8
34,721 - -0.2
34,761 - +0.8
34,810 - -0.2
34,860 - -1.8
34,876 + -1.2
34,890 + -2.0
34,890 + -1.8
34,890 + +0.8
34,890 + +0.8
34,898 - -0.2
34,898 - +0.8
34,898 - +0.8
34,898 - -1.2
34,898 - +0.8
34,898 - +0.8
34,923 + -0.2
34,923 + +0.1
34,931 - -0.2
34,972 + Dsui_0038 0.11 -0.1
34,972 + Dsui_0038 0.11 +0.1
35,019 + Dsui_0038 0.23 +0.1
35,027 - +0.8
35,139 + Dsui_0038 0.52 +0.3
35,149 + Dsui_0038 0.54 +0.2
35,155 + Dsui_0038 0.56 +0.3
35,259 + Dsui_0038 0.81 -0.3
35,413 - -0.2
35,466 + -2.1
35,554 + Dsui_0039 0.15 -2.9
35,714 + Dsui_0039 0.35 -2.6
35,794 + Dsui_0039 0.46 -1.6
35,802 + Dsui_0039 0.47 -3.4
35,971 + Dsui_0039 0.68 -3.9
36,088 + Dsui_0039 0.84 -0.8
36,096 - -0.2
36,186 + +0.1
36,193 - -0.8
36,354 + +0.9
36,377 + -0.3
36,385 - -0.8
36,391 + -0.9
36,427 + -0.6
36,436 - -1.2
36,436 - -2.2
36,449 + -0.6
36,449 + -0.9
36,457 - -0.8
36,486 - +0.8
36,502 + -0.8
36,510 - -1.2
36,525 + -0.7
36,533 - -0.8
36,533 - -0.2
36,693 + Dsui_0040 0.18 -0.1
36,708 + Dsui_0040 0.19 -1.0
36,754 - Dsui_0040 0.22 +0.8
36,789 - Dsui_0040 0.24 -0.2
36,808 + Dsui_0040 0.25 -0.6
36,821 - Dsui_0040 0.26 +0.8
36,826 + Dsui_0040 0.26 +0.0
36,826 - Dsui_0040 0.26 +0.8
36,921 - Dsui_0040 0.32 +0.8
37,014 + Dsui_0040 0.38 -0.9
37,048 + Dsui_0040 0.40 -1.1
37,048 + Dsui_0040 0.40 -1.0
37,056 - Dsui_0040 0.40 -2.3
37,133 + Dsui_0040 0.45 -0.7
37,195 + Dsui_0040 0.49 -0.7

Or see this region's nucleotide sequence