Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS19680

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS19675 and AZOBR_RS19680 are separated by 258 nucleotidesAZOBR_RS19680 and AZOBR_RS19685 overlap by 4 nucleotidesAZOBR_RS19685 and AZOBR_RS19690 are separated by 18 nucleotides AZOBR_RS19675: AZOBR_RS19675 - CoA transferase, at 1,183,841 to 1,185,043 _RS19675 AZOBR_RS19680: AZOBR_RS19680 - membrane protein, at 1,185,302 to 1,186,228 _RS19680 AZOBR_RS19685: AZOBR_RS19685 - hypothetical protein, at 1,186,225 to 1,186,605 _RS19685 AZOBR_RS19690: AZOBR_RS19690 - hypothetical protein, at 1,186,624 to 1,187,934 _RS19690 Position (kb) 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1at 1184.375 kb on + strand, within AZOBR_RS19675at 1184.376 kb on - strand, within AZOBR_RS19675at 1184.495 kb on + strand, within AZOBR_RS19675at 1184.495 kb on + strand, within AZOBR_RS19675at 1184.495 kb on + strand, within AZOBR_RS19675at 1184.496 kb on - strand, within AZOBR_RS19675at 1184.555 kb on + strand, within AZOBR_RS19675at 1184.669 kb on + strand, within AZOBR_RS19675at 1184.912 kb on + strand, within AZOBR_RS19675at 1185.108 kb on - strandat 1185.228 kb on + strandat 1185.229 kb on - strandat 1185.230 kb on + strandat 1185.230 kb on + strandat 1185.230 kb on + strandat 1185.230 kb on + strandat 1185.230 kb on + strandat 1185.230 kb on + strandat 1185.230 kb on + strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.231 kb on - strandat 1185.629 kb on + strand, within AZOBR_RS19680at 1185.629 kb on + strand, within AZOBR_RS19680at 1185.629 kb on + strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1185.630 kb on - strand, within AZOBR_RS19680at 1186.047 kb on - strand, within AZOBR_RS19680at 1186.352 kb on + strand, within AZOBR_RS19685at 1186.352 kb on + strand, within AZOBR_RS19685at 1186.352 kb on + strand, within AZOBR_RS19685at 1186.523 kb on + strand, within AZOBR_RS19685at 1186.586 kb on + strandat 1186.586 kb on + strandat 1186.587 kb on - strandat 1186.712 kb on + strandat 1186.792 kb on + strand, within AZOBR_RS19690

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
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1,184,375 + AZOBR_RS19675 0.44 +0.5
1,184,376 - AZOBR_RS19675 0.44 +1.3
1,184,495 + AZOBR_RS19675 0.54 -0.2
1,184,495 + AZOBR_RS19675 0.54 +0.6
1,184,495 + AZOBR_RS19675 0.54 +0.6
1,184,496 - AZOBR_RS19675 0.54 -0.1
1,184,555 + AZOBR_RS19675 0.59 +1.2
1,184,669 + AZOBR_RS19675 0.69 -0.2
1,184,912 + AZOBR_RS19675 0.89 -0.0
1,185,108 - +0.2
1,185,228 + +1.1
1,185,229 - +0.8
1,185,230 + +0.1
1,185,230 + -0.5
1,185,230 + -0.7
1,185,230 + +0.2
1,185,230 + +0.4
1,185,230 + -1.2
1,185,230 + +0.8
1,185,231 - -0.2
1,185,231 - +0.7
1,185,231 - +1.0
1,185,231 - +0.7
1,185,231 - +0.1
1,185,231 - -0.3
1,185,231 - +0.2
1,185,231 - +0.0
1,185,231 - -0.5
1,185,231 - +0.9
1,185,629 + AZOBR_RS19680 0.35 -1.7
1,185,629 + AZOBR_RS19680 0.35 +0.2
1,185,629 + AZOBR_RS19680 0.35 +0.2
1,185,630 - AZOBR_RS19680 0.35 +0.6
1,185,630 - AZOBR_RS19680 0.35 -2.1
1,185,630 - AZOBR_RS19680 0.35 -0.3
1,185,630 - AZOBR_RS19680 0.35 -1.9
1,185,630 - AZOBR_RS19680 0.35 +0.1
1,185,630 - AZOBR_RS19680 0.35 -0.1
1,185,630 - AZOBR_RS19680 0.35 -2.2
1,186,047 - AZOBR_RS19680 0.80 -0.1
1,186,352 + AZOBR_RS19685 0.33 +1.1
1,186,352 + AZOBR_RS19685 0.33 -0.2
1,186,352 + AZOBR_RS19685 0.33 -0.5
1,186,523 + AZOBR_RS19685 0.78 +0.0
1,186,586 + +0.2
1,186,586 + -0.1
1,186,587 - +0.6
1,186,712 + +0.3
1,186,792 + AZOBR_RS19690 0.13 +0.6

Or see this region's nucleotide sequence