Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11195

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS11190 and AZOBR_RS11195 are separated by 202 nucleotidesAZOBR_RS11195 and AZOBR_RS11200 are separated by 239 nucleotidesAZOBR_RS11200 and AZOBR_RS11205 overlap by 4 nucleotides AZOBR_RS11190: AZOBR_RS11190 - hypothetical protein, at 2,354,429 to 2,354,767 _RS11190 AZOBR_RS11195: AZOBR_RS11195 - hypothetical protein, at 2,354,970 to 2,355,665 _RS11195 AZOBR_RS11200: AZOBR_RS11200 - hypothetical protein, at 2,355,905 to 2,356,621 _RS11200 AZOBR_RS11205: AZOBR_RS11205 - flagellar motor switch protein FliM, at 2,356,618 to 2,357,700 _RS11205 Position (kb) 2354 2355 2356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2354.124 kb on + strandat 2354.149 kb on + strandat 2354.743 kb on + strandat 2354.743 kb on + strandat 2354.744 kb on - strandat 2354.859 kb on + strandat 2354.860 kb on - strandat 2354.860 kb on - strandat 2354.873 kb on + strandat 2354.874 kb on - strandat 2354.874 kb on - strandat 2354.879 kb on + strandat 2354.879 kb on + strandat 2354.879 kb on + strandat 2354.879 kb on + strandat 2354.880 kb on - strandat 2354.880 kb on - strandat 2354.880 kb on - strandat 2354.880 kb on - strandat 2354.880 kb on - strandat 2354.883 kb on + strandat 2354.883 kb on + strandat 2354.883 kb on + strandat 2354.883 kb on + strandat 2354.883 kb on + strandat 2354.883 kb on + strandat 2354.884 kb on - strandat 2354.884 kb on - strandat 2354.884 kb on - strandat 2354.884 kb on - strandat 2354.884 kb on - strandat 2354.884 kb on - strandat 2354.884 kb on - strandat 2354.885 kb on + strandat 2354.886 kb on - strandat 2354.893 kb on - strandat 2355.163 kb on + strand, within AZOBR_RS11195at 2356.265 kb on + strand, within AZOBR_RS11200

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
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2,354,124 + -1.9
2,354,149 + +0.4
2,354,743 + -0.9
2,354,743 + +0.5
2,354,744 - -0.4
2,354,859 + +0.5
2,354,860 - -1.3
2,354,860 - +0.4
2,354,873 + -0.4
2,354,874 - +0.1
2,354,874 - +0.5
2,354,879 + -2.0
2,354,879 + +0.7
2,354,879 + +0.9
2,354,879 + +1.2
2,354,880 - +0.0
2,354,880 - -0.9
2,354,880 - +0.4
2,354,880 - -0.3
2,354,880 - -2.1
2,354,883 + -1.0
2,354,883 + +0.9
2,354,883 + +0.8
2,354,883 + -0.2
2,354,883 + -0.4
2,354,883 + -1.8
2,354,884 - -0.9
2,354,884 - -0.8
2,354,884 - +0.3
2,354,884 - -0.6
2,354,884 - -0.9
2,354,884 - -0.3
2,354,884 - -0.2
2,354,885 + -2.4
2,354,886 - +0.7
2,354,893 - -1.4
2,355,163 + AZOBR_RS11195 0.28 -3.9
2,356,265 + AZOBR_RS11200 0.50 -3.8

Or see this region's nucleotide sequence