Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08695

Experiment: L-Malic (C) with ammonium chloride; anaerobic; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08685 and AZOBR_RS08690 overlap by 25 nucleotidesAZOBR_RS08690 and AZOBR_RS08695 overlap by 4 nucleotidesAZOBR_RS08695 and AZOBR_RS08700 are separated by 55 nucleotidesAZOBR_RS08700 and AZOBR_RS08705 are separated by 16 nucleotides AZOBR_RS08685: AZOBR_RS08685 - GNAT family acetyltransferase, at 1,818,742 to 1,819,383 _RS08685 AZOBR_RS08690: AZOBR_RS08690 - acetyltransferase, at 1,819,359 to 1,819,793 _RS08690 AZOBR_RS08695: AZOBR_RS08695 - 3-mercaptopyruvate sulfurtransferase, at 1,819,790 to 1,820,653 _RS08695 AZOBR_RS08700: AZOBR_RS08700 - Ala-tRNA(Pro) hydrolase, at 1,820,709 to 1,821,416 _RS08700 AZOBR_RS08705: AZOBR_RS08705 - cysteine synthase, at 1,821,433 to 1,822,437 _RS08705 Position (kb) 1819 1820 1821Strain fitness (log2 ratio) -2 -1 0 1at 1818.998 kb on + strand, within AZOBR_RS08685at 1818.999 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.065 kb on - strand, within AZOBR_RS08685at 1819.170 kb on - strand, within AZOBR_RS08685at 1819.170 kb on - strand, within AZOBR_RS08685at 1819.182 kb on - strand, within AZOBR_RS08685at 1819.182 kb on - strand, within AZOBR_RS08685at 1819.184 kb on + strand, within AZOBR_RS08685at 1819.185 kb on - strand, within AZOBR_RS08685at 1819.277 kb on + strand, within AZOBR_RS08685at 1819.277 kb on + strand, within AZOBR_RS08685at 1819.429 kb on + strand, within AZOBR_RS08690at 1819.570 kb on + strand, within AZOBR_RS08690at 1819.571 kb on - strand, within AZOBR_RS08690at 1819.573 kb on + strand, within AZOBR_RS08690at 1819.573 kb on + strand, within AZOBR_RS08690at 1819.573 kb on + strand, within AZOBR_RS08690at 1819.574 kb on - strand, within AZOBR_RS08690at 1819.765 kb on + strandat 1819.765 kb on + strandat 1819.766 kb on - strandat 1819.875 kb on + strandat 1819.875 kb on + strandat 1819.876 kb on - strandat 1820.127 kb on + strand, within AZOBR_RS08695at 1820.391 kb on + strand, within AZOBR_RS08695at 1820.391 kb on + strand, within AZOBR_RS08695at 1820.392 kb on - strand, within AZOBR_RS08695at 1820.392 kb on - strand, within AZOBR_RS08695at 1820.392 kb on - strand, within AZOBR_RS08695at 1820.674 kb on + strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1820.675 kb on - strandat 1821.316 kb on + strand, within AZOBR_RS08700

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) with ammonium chloride; anaerobic; 3 days
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1,818,998 + AZOBR_RS08685 0.40 -0.1
1,818,999 - AZOBR_RS08685 0.40 -0.3
1,819,065 - AZOBR_RS08685 0.50 +0.5
1,819,065 - AZOBR_RS08685 0.50 -0.6
1,819,065 - AZOBR_RS08685 0.50 -1.0
1,819,065 - AZOBR_RS08685 0.50 +0.7
1,819,065 - AZOBR_RS08685 0.50 +0.2
1,819,170 - AZOBR_RS08685 0.67 +0.0
1,819,170 - AZOBR_RS08685 0.67 -0.8
1,819,182 - AZOBR_RS08685 0.69 +0.9
1,819,182 - AZOBR_RS08685 0.69 +1.2
1,819,184 + AZOBR_RS08685 0.69 -0.4
1,819,185 - AZOBR_RS08685 0.69 +0.3
1,819,277 + AZOBR_RS08685 0.83 +0.3
1,819,277 + AZOBR_RS08685 0.83 +0.1
1,819,429 + AZOBR_RS08690 0.16 +0.2
1,819,570 + AZOBR_RS08690 0.49 -0.2
1,819,571 - AZOBR_RS08690 0.49 -0.1
1,819,573 + AZOBR_RS08690 0.49 -0.4
1,819,573 + AZOBR_RS08690 0.49 -1.9
1,819,573 + AZOBR_RS08690 0.49 -1.1
1,819,574 - AZOBR_RS08690 0.49 +0.3
1,819,765 + +0.7
1,819,765 + +0.3
1,819,766 - -0.7
1,819,875 + +0.7
1,819,875 + -0.5
1,819,876 - +0.4
1,820,127 + AZOBR_RS08695 0.39 +0.6
1,820,391 + AZOBR_RS08695 0.70 -1.4
1,820,391 + AZOBR_RS08695 0.70 +0.6
1,820,392 - AZOBR_RS08695 0.70 +0.7
1,820,392 - AZOBR_RS08695 0.70 +0.2
1,820,392 - AZOBR_RS08695 0.70 +0.7
1,820,674 + -0.2
1,820,675 - -1.4
1,820,675 - -0.2
1,820,675 - -0.3
1,820,675 - +0.4
1,820,675 - +0.1
1,820,675 - +0.6
1,821,316 + AZOBR_RS08700 0.86 +0.2

Or see this region's nucleotide sequence